Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02981 ATGGGCACCGCAGTCCACCTTTGTGCCGGTTTCAATTTAACCACTTCCAATCCTGCTCAAGGTACTAAATGCAAGTACGCGGGTCAATCAGTGAGAGCACTTCCTATGCGTATAATATCAGTGGGAAAGAACCGATCACGTGCGCTGCAACTCATGGTTGATGAGTACGTTGAAAAGATAAAGTACTATTGCAGTGTTGAGGATGTTCAGATTCGGTCAAATCCCAGAAATGCACGTGACCAAAGGGCTCAGGTTGATGATGAAGACACGGCAGTGATGAACCTTATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACGTGGGAAAGACATACGATCTGAGCAAATGGCAGAGTTGGTGGGTGATGCTGGAAATACTGGTGCTTCACGATTATCTTTCTGTATTGGTGGGCCCTATGGTCATGGAAGAAAAATACGAGAACGTGCTAACTTATCAATCAAGTTATCTTCACTGGTCTTAAATCATCAAATAGCATTACTAGTGCTCATGGAACAGCTTTACAGGTCATGGACAATTTTAAGAGGACAAAAGTACCATCATTAG 567 0.4339 MGTAVHLCAGFNLTTSNPAQGTKCKYAGQSVRALPMRIISVGKNRSRALQLMVDEYVEKIKYYCSVEDVQIRSNPRNARDQRAQVDDEDTAVMNLIRSDDWVVMLDERGKDIRSEQMAELVGDAGNTGASRLSFCIGGPYGHGRKIRERANLSIKLSSLVLNHQIALLVLMEQLYRSWTILRGQKYHH. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02981 188 SFLD SPOUT Methyltransferase 16 188 - -
Seca8g02981 188 PIRSF MT_bac 34 188 IPR003742 GO:0006364|GO:0008168
Seca8g02981 188 Hamap Ribosomal RNA large subunit methyltransferase H [rlmH]. 34 188 IPR003742 GO:0006364|GO:0008168
Seca8g02981 188 PANTHER METHYLTRANSFERASE 15 188 IPR003742 GO:0006364|GO:0008168
Seca8g02981 188 Gene3D - 33 188 IPR029026 -
Seca8g02981 188 SUPERFAMILY alpha/beta knot 35 186 IPR029028 -
Seca8g02981 188 Pfam Predicted SPOUT methyltransferase 36 187 IPR003742 GO:0006364|GO:0008168
Seca8g02981 188 CDD RlmH-like 37 188 IPR003742 GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02981 Seca-Chr8 83224075 83228537 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02981 K00783 - gmx:100796609 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02981 8 83224075 83228537 Seca8g02981 8 83224075 83228537 ECH