Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02927 ATGTCACCAAAACCAGGCATGTATGAACCAAAAAATATCCTCATAACTGGAGCTGCTGGTTTCATAGCCTCCCATGTCACCACAAGGTTAATTAACAAGTACCCTGGTTACAAGATTGTAGCTCTTGATAAACTAGACTATTGCTCTACTTTCAAGAATATACAGTCATGCACATCATCACCAAAGTTCAAATTCATCAAGGGTGATATAGCTACTGCTGATATTGTGAATCATATTTTGATAGAAGAGGAAATAGACACCATTATGCATTTTGCTGCTCAAACCCATGTGGATAATTCATTTGGAAACTCCATGGAATTCACCTATAATAATATATATGGCACCCATGTGCTTCTTGAAGCCTGTAGGGTTACCAATTGTGTTAAAAGGTTCATCCATGTTAGCACTGATGAAGTTTATGGTGAAACTGACTTAGAGGCTAATATTGGAAATCATGAGGCATCTCAACTTCTACCCACCAATCCTTATTCTGCAACAAAAGCAGGGGCAGAAATGTTGGTGATGGCTTATCATAGGTCTTATGGCCTTCCAATTATAACTTCTAGAGGCAACAATGTTTATGGTCCTAACCAGTACCCAGAAAAGCTTGTTCCTAAATTCATTCTTCTTGCCATGAAAGGTCAGAAATTGCCAATTCATGGTGATGGATCCAATGTGAGAAGCTATCTCTATTGTGGAGATGTGGCAGAGGCATTTGATGTCATACTTCATAAAGGAGAAATTGGCCAAGTCTATAATATTGGCACTAAGAAGGAAAGGAGTGTGCTAGATGTAGCAGAGGACATTTGCAAGCTCTTTGAATTGAAATCTAAGGAAGTTATTGAGTTTGTTCAAGATAGGCCTTTCAATGACAAGAGATATTTTCTGGATGATCAAAAGCTCAAGCAGCTTGGTTGGGAGGAGAGAACTCCTTGGGAGGAAGGACTTAAAATGACAATTGATTGGTACAAAAAGAACCCTGATTGGTGGGGTGATGTATCTACTGCTTTAAATCCACATCCACGTTTCTCAGCTATCAATCTCTCTGATGAAGCTCAATGGTCCTTTCAATATGGATATTCAAGGTTGTTGAGATCATTTACTGAAGTTGGTCGCAGTAATTCAGGATTGAAATTCCTAATATATGGGAGGACAGGTTGGATAGGAGGGTTATTAGGAAAGCTTTGTGATGAAGAGAGAATTGCTTGGGAGTATGGGAAAGGAAGATTACAAGATAGAAAATCACTTGAGGAGGATATAAAAAGGGTAATGCCAACTCATGTGTTAAATGCAGCTGGTGTTACTGGAAGGCCAAATGTTGATTGGTGTGAATCACACAAAGTTGAAACAATAAGGACTAATGTAGTAGGCACATTAACATTGGCTGATGTTTGCAAGGAACGTGGCTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGATCATCCTCTAGGATCAGGAATTGGATTCAAGGAGGAGGACAAGCCAAATTTCATTGGTTCCTTCTATTCAAAGACCAAGGCCATGGTGGAGGAGCTCCTAAAAAATTATGATAATGTCTGCACATTGAGAGTTAGAATGCCAATATCATCAGATCTTAGCAATCCAAGAAACTTCATCACAAAGATTAGTCGTTACAACAAAGTGGTAAACATACCTAATAGCATGACAGTGCTAGATGAGCTCTTACCTATATCCATTGAGATGGCTAAGAGGAACTTAAGAGGGATATGGAACTTCACCAACCCAGGAGTCATAAGCCACAATGAGATATTAGAATTGTATAAGGACTACATAGACCCTCAATTTAAATGGGAGAACTTTAATTTGGAAGAACAAGCAAAGGTAATAGTTGCTCCTAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAACGAGTTCCCAGATTTGTTGTCCATCAAAGATTCCATAATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1986 0.3847 MSPKPGMYEPKNILITGAAGFIASHVTTRLINKYPGYKIVALDKLDYCSTFKNIQSCTSSPKFKFIKGDIATADIVNHILIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNCVKRFIHVSTDEVYGETDLEANIGNHEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGQKLPIHGDGSNVRSYLYCGDVAEAFDVILHKGEIGQVYNIGTKKERSVLDVAEDICKLFELKSKEVIEFVQDRPFNDKRYFLDDQKLKQLGWEERTPWEEGLKMTIDWYKKNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGYSRLLRSFTEVGRSNSGLKFLIYGRTGWIGGLLGKLCDEERIAWEYGKGRLQDRKSLEEDIKRVMPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKERGLYMMNFATGCIFEYDKDHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKNYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVISHNEILELYKDYIDPQFKWENFNLEEQAKVIVAPRSNNEMDASKLKNEFPDLLSIKDSIIKFVFEPNKKT. 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02927 661 Gene3D - 13 317 - -
Seca8g02927 661 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Seca8g02927 661 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 7 342 - -
Seca8g02927 661 Pfam RmlD substrate binding domain 378 548 IPR029903 -
Seca8g02927 661 FunFam UDP-glucose 4,6-dehydratase 13 215 - -
Seca8g02927 661 Gene3D - 369 661 - -
Seca8g02927 661 CDD dTDP_HR_like_SDR_e 378 650 - -
Seca8g02927 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 375 652 IPR036291 -
Seca8g02927 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 334 IPR036291 -
Seca8g02927 661 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 368 661 - -
Seca8g02927 661 Gene3D - 204 326 - -
Seca8g02927 661 Pfam GDP-mannose 4,6 dehydratase 14 319 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02927 Seca-Chr8 81285831 81288772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02927 12 323 Miscellaneous Gene Families AT4G00110 26.567 3.05e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02927 K12450 - gmx:100776241 1280.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02927 8 81285831 81288772 Seca8g02927 8 81285831 81288772 ECH