Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02571 ATGCAGATTCAAACCTGTCACTCAATCAACCCCCAAACTCTTCCACTACCATGGAATTTGAAAACGGGCCCCCACCGAACACACCGCCACCTGTTGTCGCCACCCAAATCCGCCATCTCCACCGCACCGCCGCCTCTAAAATCTCGGAAGATGCACTCAATGCCGCCGGAAAAGGTGGAGATTTTCAAGTCACTGGAGGGATGGGCTTCCGAGTCGGTGCTGCCATTGCTGAAGCCCGTGGAGCAATGTTGGCAGCCCCAGAGTATGGTTCCCGATTCCTCGTTGCCGTTCGAGGAGTTCAAGGACCAAGTGAAGGACCTTCGCGACCGCACCAAGGAGCTGCCAGATGAGTACTTTGTGGTGTTGGTTGGCGACATGGTGACGGAAGACGCGCTTCCCACATACCAGAGCATGATCAACAATCTCGATGGGGTGGGCGATGAGATTGGATCGAGCCCAAGCCCATGGGCCGTGTGGACCCGGGCTTGGACTGCCGAAGAAAACAGACACGGGGATTTACTCAGAACTTACTTGTATCTGTCTGGTCGGGTTGATATGACCATGATCGAGAAGACAGTCCAGTACCTCATTGGAGCAGGCATGGACCCGGGCACTGAAAACAACCCATATTTGGGGTTTGTGTACACGTCATTCCAAGAGCGAGCAACGTTCGTGTCACACGGCAACACCGCTCGTCTCGCGAAGGAGGGTGGCGATCCAGTGCTTGCACGCATATGTGGGACCATCGCTGGGGACGAGAGGCGTCATGAGAACGCTTACGCGAAGATCGTGGAGAAGCTTCTAGAAATTGACCCCAACGGTGCGATGGTAGCCATAGGAGACATGATGGAGAAGAAAATCACAATGCCGGCGCACCTTATGTACGATGGTCAGGACCCCAAGCTATTCGAGCACTTCTCTGCAGTGGCACAGCGTATTGGCGTGTACACGGCGAATGATTACGCTGATATCTTGGAGTTTCTGATCGGACGGTGGAGATTGGAGAAGCTGGAAGGATTGAATGCTGATGGAAAGAGGGCGCAGGATTTCGTGTGTGGGCTAGCACCCAGGATTAGGAGGCTACAGGAACGAGCTGATGCGCGGGCACGCAAGATGAAGCCGCATGGGGTCAAGTTCAGTTGGATCTTCAATAACGAAGTGATTTTGTGA 1170 0.5402 MQIQTCHSINPQTLPLPWNLKTGPHRTHRHLLSPPKSAISTAPPPLKSRKMHSMPPEKVEIFKSLEGWASESVLPLLKPVEQCWQPQSMVPDSSLPFEEFKDQVKDLRDRTKELPDEYFVVLVGDMVTEDALPTYQSMINNLDGVGDEIGSSPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMTMIEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAGDERRHENAYAKIVEKLLEIDPNGAMVAIGDMMEKKITMPAHLMYDGQDPKLFEHFSAVAQRIGVYTANDYADILEFLIGRWRLEKLEGLNADGKRAQDFVCGLAPRIRRLQERADARARKMKPHGVKFSWIFNNEVIL. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02571 389 MobiDBLite consensus disorder prediction 17 53 - -
Seca8g02571 389 PIRSF Dlt9_acylACP_des 22 389 IPR005067 GO:0006631|GO:0045300
Seca8g02571 389 CDD Acyl_ACP_Desat 57 365 IPR005067 GO:0006631|GO:0045300
Seca8g02571 389 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 45 387 IPR005067 GO:0006631|GO:0045300
Seca8g02571 389 Gene3D Ribonucleotide Reductase, subunit A 43 389 IPR012348 GO:0016491
Seca8g02571 389 ProSitePatterns Fatty acid desaturases family 2 signature. 307 326 IPR005803 GO:0006633|GO:0016491
Seca8g02571 389 Pfam Fatty acid desaturase 57 383 IPR005067 GO:0006631|GO:0045300
Seca8g02571 389 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 42 389 - -
Seca8g02571 389 SUPERFAMILY Ferritin-like 48 388 IPR009078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02571 Seca-Chr8 58562028 58564710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02571 34 387 Acyl Lipid Metabolism Gene Families AT1G43800 77.095 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02571 K03921 - gmx:100037478 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02571 8 58562028 58564710 Seca8g02571 8 58562028 58564710 ECH