Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02550 ATGGTGAAAGAAACAGAGTACTACGATATCCTTGGCGTCCCTCCCTCTGCCTCCGATGACCAAATTCGCAAGGCTTATTATCAAAAGGCAAAGCAAGTTCATCCCGATAGAAACCCAAACGATCCTCATGCTGCCGAGAAATTCCAGATTTTGGGCGAAGCGTACCAAGTTTTGAGTGATCCGGTGCAGAGGAATGCGTACAATCAAAATGGGAAGCATTCTGTGTCTAGAGAAACTATGCTTGACCCCACGGCTGTCTTCGCCCTACTCTTTGGAAGTGAATTGTTTGAGGACTACGTAGGGCATTTAGCTGTGGCATCGATGACTTCTACTGAACTAGCTGATGAAAGTGAGGATCATGATAAACTGCACGAAAAGCTAAAGGCTGTCCAGAAAGAAAGGGAAGAAAAGCTGGCAAGATTTTTGAAAGATTTTCTTGGGCAATATGTCCGTGGTGACAAAAAGGGATTCTGCCAGCGCGCAGAATCTGAAGCAAGACGACTTTCTCATGCAGCCTTTGGAGTTGATATGTTGCATACCATCGGCTATATATATTCAAGACAGGCAGCACAAGAACTTGGAAAAAAAGCCATTTATCTCGGAGTGCCATTTCTAGCTGAATGGGTTCGCAATAAAGGACATTTCTGGAAATCACAATTCACAGCTGCTAAAGGTGCTTATCAGTTACTTCAGCTTCAAGAAGACATCCGCAAGCAATTTAAAATGGATGGTAGTGGCCCTGAGAATGATGTTGACTCTCATATTCGTCTTAATAAGGATACATTGATGAATTCCTTGTGGAAGTTGAATGTGGTGGACATAGAAGTAACCCTTGTACACGTGTGTCAAATGGTGCTAAAGGAAAATAACGTTAAGAAGGAGGAACTTAAAGTTCGGGCTACCGCTCTTAAAATTCTTGGGAAGATTTTTCAGGTGCACATCTTAAGTTACTTAGCATCAAGTATTTTAACTTTCAGCTTTCTAGGAATACAAGATATGAATTGTTTCTTTATATCAACTCTGGTTACCCACATGACCCCTCATTTCCCACAGTATAAGCAATATGTCTACAGATTATGTAGACCAAATTCCTGTCCCTTAGGAGTGAGAAGATTCATCAAGTACAATGACGAGAAGCTCTATTTTCCTCTAGTAACTGATATAATATGA 1170 0.4137 MVKETEYYDILGVPPSASDDQIRKAYYQKAKQVHPDRNPNDPHAAEKFQILGEAYQVLSDPVQRNAYNQNGKHSVSRETMLDPTAVFALLFGSELFEDYVGHLAVASMTSTELADESEDHDKLHEKLKAVQKEREEKLARFLKDFLGQYVRGDKKGFCQRAESEARRLSHAAFGVDMLHTIGYIYSRQAAQELGKKAIYLGVPFLAEWVRNKGHFWKSQFTAAKGAYQLLQLQEDIRKQFKMDGSGPENDVDSHIRLNKDTLMNSLWKLNVVDIEVTLVHVCQMVLKENNVKKEELKVRATALKILGKIFQVHILSYLASSILTFSFLGIQDMNCFFISTLVTHMTPHFPQYKQYVYRLCRPNSCPLGVRRFIKYNDEKLYFPLVTDII. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02550 389 Pfam DnaJ domain 6 68 IPR001623 -
Seca8g02550 389 CDD DnaJ 6 60 IPR001623 -
Seca8g02550 389 SMART dnaj_3 5 63 IPR001623 -
Seca8g02550 389 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Seca8g02550 389 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 311 - -
Seca8g02550 389 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Seca8g02550 389 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Seca8g02550 389 Gene3D DnaJ domain 1 86 IPR036869 -
Seca8g02550 389 Pfam X-domain of DnaJ-containing 131 311 IPR026894 -
Seca8g02550 389 Coils Coil 113 140 - -
Seca8g02550 389 PRINTS DnaJ domain signature 8 26 IPR001623 -
Seca8g02550 389 PRINTS DnaJ domain signature 26 41 IPR001623 -
Seca8g02550 389 PRINTS DnaJ domain signature 43 63 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02550 Seca-Chr8 57455438 57465066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02550 7 81 Miscellaneous Gene Families AT1G16680 40.260 2.90e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02550 - - gmx:100793811 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02550 8 57455438 57465066 Seca8g02550 8 57455438 57465066 ECH