Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02449 ATGTCGATCTTCGAGTACAATGGAAGTGCCCTAGTGGCCATGGTGGGCAAGAACTGCTTCGCCATTGCCAGCGATCGAAGGCTCGGCGTTCAGCTCCAAACCATAGCCACCGACTTTCAGAGAATTTCCAAGATTCACGACAAGCTCTTCATCGGTCTCTCTGGTCTCGCCACCGATGCTCAGACACTGTATCAGCGTCTCGTTTTTCGGCACAAGCTGTATCAGCTTCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGCTTGGTCTCTGCTCTTCTCTACGAGAAAAGGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATGCGATTGGAGCAAAGGAGCTTGCAAAAGATTTTGTTGTTGCAGGCACTGCATCTGAGTCTCTATATGGTGCTTGTGAGTCGATGTTTAAGCCTAACATGGAATCAGAAGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCAGTAGACCGTGATTGTCTAAGTGGATGGGGCGGACATGTCTATGTTGTCACGCCAACTGAAGTAAAGGAAAGGATTTTGAAGGGAAGGATGGATTAA 615 0.4732 MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLGDEDKPFICTMDAIGAKELAKDFVVAGTASESLYGACESMFKPNMESEELFETISQALLSSVDRDCLSGWGGHVYVVTPTEVKERILKGRMD. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02449 204 PANTHER METALLOPROTEASE TLDD 4 197 IPR023333 -
Seca8g02449 204 CDD proteasome_beta_type_3 6 200 IPR033811 GO:0019774|GO:0043161
Seca8g02449 204 ProSiteProfiles Proteasome beta-type subunit profile. 8 189 IPR023333 -
Seca8g02449 204 Pfam Proteasome subunit 7 189 IPR001353 GO:0005839|GO:0051603
Seca8g02449 204 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 204 IPR029055 -
Seca8g02449 204 FunFam Proteasome subunit beta 1 204 - -
Seca8g02449 204 ProSitePatterns Proteasome beta-type subunits signature. 12 59 IPR016050 GO:0005839|GO:0051603
Seca8g02449 204 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 204 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02449 Seca-Chr8 52275398 52279267 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02449 K02735 - gmx:100306084 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02449 8 52275398 52279267 Seca8g02449 8 52275398 52279267 ECH