Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02220 ATGGACGAGCCCTCGCTTCAACTTGTCTCCGAAATCGGAACTCACCTCGCCCAACGAACTCGTCCCAACAAGGATTTCATCATCAAATCTCTCCGACAAGCTGCAAATGCGTTGTCTCAGTTAGAACAGTCTCCTGAGCCACGAACCACCAGAGAAGTACAAGCTGCCAAGAAACGTGAAGCTGCTTTGAAGCCCCTGACAAATGCTGTGGTTGGTGGTCTGCTTCAACATGCGGATAAGGATGTTAAGCTTCTAGTCGCTATTTGCGTTACTGAACTTTTTAGAATCAAGGCACCTGAACCACCTTTTGAAGACAAGCATTTAAGGGATGTATTTAAACTCCTTATTAGCTTGTTTGCGGATCTAGCTGACACTGCAAGTCCATTATTTTCAAAAAGGGTTAAAGTATTGGACACTGTGGCTCAATTAAGGTGTTGTGTGATAATGCTGGAGATTGACTGCATGGACCTCGTTCTCAGGATGTTCAATGTTTTCTTCTCAGCTGTGAGAGATGATCACCATGATAGTTTGATTAGTGCCATGTCTTCTATAATGATAAACATATTGAATGAGAGTGAGGAGGCTTCTCAGCAACTATTGGAAGTGATTTTACGAAATCTTATAAAGCGAAAAAAAGATGCAACTTGTGCTGCTTATCAACTTGCTGAATCAGTCATCAAAACTTGTGCACAAGGGGATGAACTGAACCCCCTAGTTTGTAGGTTTTTAACTTCTTGTATACATGACAGAGACGCTGTGGGCTGTGAGATTAAAGAATTTTACCATGAAATTATCTTTCAAGTTTTCCAGTGTGCACCTCACATGCTTCTTGCTGTCATCCCAAGCTTAATTGAAGAATTATTGGCGGATCAGGTTGATGTTCGGATAAAAGCTGTTAATTTGGTGGGGAAGCTTTTTGCACTTCCAGAACACCATGTTGCACAAAAGTATCATGATCTTTTTGTGGAGTTTTTGAAGAGATTCTCTGATAAATCTGTGGATGTTAGAATTAGTGCTCTACAATGTGCCAAATCTTTCTATTTCGCAAATCCCTATGGGAGAGAATCACATGAAATTATCACTTCTGTTGAAGATCGACTATTAGACTTTGATGACCGAGTGAGAATGCAGGCAGTTCTTGTTGCCTGTGATATTTCCATTTCAAACCTGAAACTAGTTCCATCCAAACTAATATCTCAAGCCACTGAAAGACTTCGAGATAAAAAGATATCTGTTAGAAAGAGGGCCTTGCAGAAGTTGATTGAAATATATCGAGATTACTGCAAAAAATGTTGGGAAGGAAGCATGACAATTAGTAATCACTTTGAAGAGATTCCATGTAAAATTATGATGCTTTGCTATGATAAAGATTGTAAGGAGTTCAGGTCACAGAACATGGAATTTGTTCTTGCTGATGATTTATTTCCTGAGCATCTTTCTGTTGAAGAAAGGACAAAGCACTGGATACACATGTTTTCTCTTTTCAGTTCTCTTCATGAAAAGGCACTGAATACTATTTTGACTCAAAAAAGAAGGTTTCAAAATGAAATGAAAAACTATTTGGCCATGCGGACAAAATTTAAGGAAATTTGTTCTGAAGAAATACAGAAGAAGATTCAAAGTATGTTTACAAAAATGGCTGCTTCGTTCTCAGATTCTCACAAAGCTGAAGAGTGCCTTCATAAGTTAAACCAAATTAAAGATAATAATGTATTTAAATCACTTGAAAAATTATTGGAGGAACAAACCTTCACAACTGGACAAGCCATCAAAGATGAACTTCTAGTGATGATTGGAGACAGCAATCCATATTATGAGTTTTTACGTTCAATCTTCTCCAAATGTTCATCTAACATTTTCAGCTCAGAGCATGTCCAGTGTATCTTAAATTATCTTTCCAATCATGAAAGTGGAAATGAGGACTTGGAGGATTCTCTAGCGAATCTTCTGCTGGCTATTGTTAACATTTTCCCCTCAATGCTGAAAGGCTCAGAAAAGCAGTTCCAAATGTTGTTGGCACAGATGAGTCCTGTTAATGACAAGCTGATTGAGGTTATTGCAAAGGCTGGCTCTCACATTTCTTTCAATGTTAGCCATATTTATCCATTTTTGGAGAGAATGTGCTTGGATGGAACTCGCAGACAGGCCAAATTTGCTGTTTCTGCTATTGCTGTCTTGAAATCTGAACAAACAGTTTTCTTAAATTTATATGAGGGACTAATTGATTCTTTATATAGCCAATGGAATGTTCCAACAACTTTGCAATCTCTGGGATGCATTGCACAATACTCTGTTTCAACTTTTAAAACTCGAGATGAAGAGATCACTTCATATATATGTCAGAAGATTCTTCAAATGGAGCACTCTGGTGATGGTTATGATGTGACATCATTTCATGATACCTCTCATTGTAGCGAATCTTGTCAATTAAAGATTTATGGGCTGAAAACACTGGTAAAGAGTTATTTGCCTTATAAAGAGAACCATATCAAACAGAATATTAATGGATTATTGGACATTTTGTCGAGAATGCTACAGGAAAGTGATAGTTTCGTTCATACAGATACAGGCTCCTGTGAAAATGATAAGGCCCATATCAGATTAGCTGCTGCAAAGGCAATTCTTCGTCTTGCTAGGAAGTGGGATTTACACATCACTCCAGAAATTTTTCGCTTCACTATTTTGATTGCGAAGGACACTTCCTCTTTTGTTAGGAGCACATTTCTTAGTAAAACACATAAATTGTTGAAGGAGCGTAAACTACCTATCAGATTTGCTTGTGCTTTTGCTTTGGCAATGAAAGATAGCATTGAGGATCTACGATATCATAACTACAAATATATGGCAGAGTTTATTAAAGATTACAGTATATTAGCTCGCAAACGACAATCTTCTGCGGTTCAAGGAGCAATCATTGATTACCCTGCATACATTTTAGTCTTCTTGATCCATGTGCTTGCTCATTGCAATGAATTTCCGATTGAAGTCTGTCAAGATGAAAATTTGTATGCTGACCTTTGTAGTCCTCTCTTCTTTGTCCTGCAGACATTAGTTGATGCCAGCACTGTTGATGGTGACCTGGACCTTGTTAATGATGCTGCCTTACATCTATTTAGTATTTTACGAGCAATCAGAAAAGCTGAGGATGCTGTTGATATGCAGATGACAAGCAAGCTGCACATGCTGGCTCAAATTGGGATATTTATTTTAAATGCATTAAATCTTGGTGGAATTTGTCTATCGCAAGCCCCTGGACAAATTTTGTTGCCTTCATCATTGTATAGAGTGAGTCTCGCCAAGAATGATGCTAATTCAAAATGTCCGAAGTCCTTTTTTGATGAAAGTTTTCTAAGTAGAGTCTTTCACACGCTTAAATCTAGTGCCTCTCAGGCTTATGCTCAACAACCTTCGAAAACACTTCCTAAGCATGGTCGCAAGGGTCAACAGGATGTCCCAAGGTCCAATATTAATATTGGTGTTGTACCGGGCTTGGCATCTAGCAAACATGACGATTTGTCAAGGAGAGACATAATCAATGCTAAAACTGTGAGGCCCAAAATTCCTTCAGCAAAAAGGAAAAAACATGCTCCTCCTTCTGGTTCTGGATCAATTGGTTTACATGAATGTTCTACAATTGAGAAGCAACAAAAATCAGTGTCAATACATGGTGAAAAGACGTCAAAGAGAAACCTGGTTTCATCTACCGATTCTGTGAACTGTGAGGGCTCTCTTGCTGAATCACAGGTGCTGACCCGTAGATCGAAAAGAGCTGCTGCTTATTCATTGGAGAATGCTGTGACAAGTAGCAAACATACTGTTCCACATTTAAAATGCCCTAGAACCAACCTCAAAGATACATGTGGATCAAAGAAACAAGATATACTGGCAGATGTCTCGAATAAACATTTCTGCAACCGTGATCCTGGTGAACATTCTTCTCTCAGTAGTGTAAAGAAAACTACTGCTACAAAAGGAGGCCTATCAGTCAAAGAGGGAAGATCGCTGAATGAAAATACAAGTGTGAATGGAAAGGGAAAGTGCAGGGAGAATTCAGCATCAGAAGTTGTCAATACGAATGCATATGCTGTTAGAACAAGACGGAAAGTATAA 4110 0.3854 MDEPSLQLVSEIGTHLAQRTRPNKDFIIKSLRQAANALSQLEQSPEPRTTREVQAAKKREAALKPLTNAVVGGLLQHADKDVKLLVAICVTELFRIKAPEPPFEDKHLRDVFKLLISLFADLADTASPLFSKRVKVLDTVAQLRCCVIMLEIDCMDLVLRMFNVFFSAVRDDHHDSLISAMSSIMINILNESEEASQQLLEVILRNLIKRKKDATCAAYQLAESVIKTCAQGDELNPLVCRFLTSCIHDRDAVGCEIKEFYHEIIFQVFQCAPHMLLAVIPSLIEELLADQVDVRIKAVNLVGKLFALPEHHVAQKYHDLFVEFLKRFSDKSVDVRISALQCAKSFYFANPYGRESHEIITSVEDRLLDFDDRVRMQAVLVACDISISNLKLVPSKLISQATERLRDKKISVRKRALQKLIEIYRDYCKKCWEGSMTISNHFEEIPCKIMMLCYDKDCKEFRSQNMEFVLADDLFPEHLSVEERTKHWIHMFSLFSSLHEKALNTILTQKRRFQNEMKNYLAMRTKFKEICSEEIQKKIQSMFTKMAASFSDSHKAEECLHKLNQIKDNNVFKSLEKLLEEQTFTTGQAIKDELLVMIGDSNPYYEFLRSIFSKCSSNIFSSEHVQCILNYLSNHESGNEDLEDSLANLLLAIVNIFPSMLKGSEKQFQMLLAQMSPVNDKLIEVIAKAGSHISFNVSHIYPFLERMCLDGTRRQAKFAVSAIAVLKSEQTVFLNLYEGLIDSLYSQWNVPTTLQSLGCIAQYSVSTFKTRDEEITSYICQKILQMEHSGDGYDVTSFHDTSHCSESCQLKIYGLKTLVKSYLPYKENHIKQNINGLLDILSRMLQESDSFVHTDTGSCENDKAHIRLAAAKAILRLARKWDLHITPEIFRFTILIAKDTSSFVRSTFLSKTHKLLKERKLPIRFACAFALAMKDSIEDLRYHNYKYMAEFIKDYSILARKRQSSAVQGAIIDYPAYILVFLIHVLAHCNEFPIEVCQDENLYADLCSPLFFVLQTLVDASTVDGDLDLVNDAALHLFSILRAIRKAEDAVDMQMTSKLHMLAQIGIFILNALNLGGICLSQAPGQILLPSSLYRVSLAKNDANSKCPKSFFDESFLSRVFHTLKSSASQAYAQQPSKTLPKHGRKGQQDVPRSNINIGVVPGLASSKHDDLSRRDIINAKTVRPKIPSAKRKKHAPPSGSGSIGLHECSTIEKQQKSVSIHGEKTSKRNLVSSTDSVNCEGSLAESQVLTRRSKRAAAYSLENAVTSSKHTVPHLKCPRTNLKDTCGSKKQDILADVSNKHFCNRDPGEHSSLSSVKKTTATKGGLSVKEGRSLNENTSVNGKGKCRENSASEVVNTNAYAVRTRRKV. 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02220 1369 SUPERFAMILY ARM repeat 59 1047 IPR016024 -
Seca8g02220 1369 Gene3D - 262 433 IPR011989 -
Seca8g02220 1369 MobiDBLite consensus disorder prediction 1332 1351 - -
Seca8g02220 1369 MobiDBLite consensus disorder prediction 1132 1234 - -
Seca8g02220 1369 MobiDBLite consensus disorder prediction 1307 1351 - -
Seca8g02220 1369 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 7 1271 IPR039776 GO:0007064
Seca8g02220 1369 CDD PDS5 27 658 - -
Seca8g02220 1369 MobiDBLite consensus disorder prediction 1309 1323 - -
Seca8g02220 1369 Pfam Sister chromatid cohesion protein PDS5 protein 25 1095 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02220 Seca-Chr8 48822750 48856135 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02220 K11267 - gmx:100777822 1999.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02220 8 48822750 48856135 Seca8g02220 8 48822750 48856135 ECH