Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02140 ATGAGAGCCGCGGTTGAAGGATCCATGACTGAGAGGTTCGATGATGGGGAAAAGGAGAAGAAGAAGAAGCGACGATCCAATCGTCGCTCAAAGCAAAACCCTCCCTCATCTTCAGCATCTGAAGTAAATGAGACCCATGGGGTGTCATCAGAATGTCCAGGAAAGAATGGAGCACCAACTCATACGACTGCATCCTTGAGCAATTCACTGAAGCAGCAGGGGGTTAATGTTTGTTCCCCTAATGAGCAAGGATTATCCAAAGCATCAAATGTTGCTTGCATTTCATTGCCTCCCCTGCATAACAGTGAGCTAGCGGAACCTGTTGATTTGCAAAATATGAAAATACATGGTGGAGGAATTGATTCAAAATCATTTTCTGAGCCCACTGGTTGGAGAGGCTCATCAGGAACTAATAAAAACAAAGACTCAGTCCCTTGCGGTCAAATTGGGCCTTGTGCCCAGAGAAATTATTTTAGCCCGCATTGGTCTGCAGAGGTGGTTGAGAAGGCATTAGAGAGGGGTGATGTTTTAAAAGCTCTCTTTCATGTCAATGCTCACAATAGACTTGAGGCCTACTGTAAAATTGATGGAGTGCCAACAGATATTCTCATTGGTGGGATTCCGGCCCAGAATAGAGCTGTGGATGGTGATATTGTTGCAATTAAGATTGATCCTTTGCCATTGTGGACAAAAATGAAAGGACCAAACGGAAATAGCAACAATACTGCAACACTGGAAGGTTGTAACCTTGCAGAAGATGATGAAGTGGGTGATAACAATTGTAAAGGAAAAGGTAAGGTAGATGCTGATTATGAGTCTGCCCATAGCAGAAGCTGTCCTGGTCAAAACAAGGAAGATTCTGATAACAACTCCACCCCTTATAAAAGTCATCCATTTCCTGAAAAAAGATACCTTTACGGGGATAATACTTCCCATGGTTCAACTACCCATTTAGATCCACTTGGACTAGCCAACTGTGATAGCATCGATGGACATCATTGTTCTGCTTCTGATTCCTTAAAGATCAATTCTTATAGTGCACAGAGTGAAGTAATTAATGCAGTGGAGAAGTTGTCTTTGTTGGTTAATTCTTTCCCTTCTAAAAGACCAACTGGACGAGTGGTTGCTGTTATTGAGAGGTCTCCACGTCGAGAGGGTATTGTTGGTCATCTTAGTCTGAAGTCATGGGCTTCTTTCAGGGACAATAGCAAAAAAGATGTGAAGAAGAATAAGAATATGGTTTCTGAGCATGAATACATCCAGATGACACCAACTGATCCCAAGTTTCCTAACTTGATGCTTCGTATTAGAGAGTTGCCAGAGTGCATTAAAAAACGGCTGAAAAGTGGTGATGTGACAATTGAAATGGATCTGGTAGCTGCACAAATTGATGATTGGGTTGAAGAAAGTCCTTTACCTGAGGGTCACATCTTGCATATTTTTGGACGAGGTGGTGAAGTTCAGCCCCAATTAGATGCAATTTTGTTTCAGAATGCAATCTGTTTGTCTGAATTTTCTCCAGAAGTTCTGTCCTGCCTGCCATGTGTTCCTTGGGAGTTGCCGGTAAAGGAAATGCAAAGTAGAATAGATCTTAGAAATTTGTGCATATTTACTATTGATCCTTCAACCGCAACTGATCTGGATGATGCATTGTCAATTGAGAAGTTACCTAATGGAAATTTTAGAGTAGGTATCCACATTGCTGATGCATCATACTTTGTTGTACCGGACTCTGCTTTAGATAGGGAGGCTCAGTTTAGGTCAACAAGTGTTTATATGTTGCAAAAAAAGTTGCCTATGTTGCCTGCAATATTTTCAGAAAATGTTGGTTCACTTAATCCTGGAGTGGATCGACTTGCTGTTTCCATGCTCCTGGATATAACTGTTGCTGGGGATGTTGTGGACCGTTGGATAGGTCGTACTGTTATTCAATCTTGTTGTAAGCTTTCATATGAACTTGCCCAGGACATCATTGATGGGACTTTTGATTTTGAAAGCTCGAACTTTTATGAAGATGACTACCCTAAAGTTCATGGGCGTTTTGAATGGCCTGAGGTTATTTCATCTTTGAAGAGTCTTTATGAAATTTCAGAAGTCTTGAAACACAAGAGGTTTACTGATGGGGCATTGCGGCTTGATAATCCTAAAGTTGTGATCCTGTTTGATGAAAATGGAATTCCTTATGATAGTATGTTTTCCGAACGGAGAGAATCAAATTTTCTTGTTGAGGAATATATGCTTTTGGCCAATGTAACAGCAGCTGAAGTCATATGTAGAGCTTATCCTAATGTTGCATTATTGCGGAGGCATCCTGATCCTAATATGCGGAAGCTGAGAGAGTTTATGGCATTTTGTCAGAAGCATGGTTTAGAATTGGACACATCTTCATCTGGTCAGTTCCATAGGTCGTTAGAGCAGATAAAGGAAATGCTCAAGGATGACCCTGTGCTTTATGATATACTTATTTCCTTTGCTACAAGACCAATGCAGTTGGCATCTTACTTCTGTAGTGGAGATTTAAAGGACAATGAGCATGAATGGGGTCATTATGCATTGGCTGTCCCTTTTTACACTCATTTCACATCACCTTTACGTCGGTATCCAGATATTGTTGTTCATCGGACACTACTTGCTGCTATAGAGGCTGAGGAATTATATATGAAGCATCAGAAGGCTTTGGAGGTTTTCAAGGAAGTGGAAGTACAAAAAAGATGTTTCACAGGTATCAACTTCGATAAAAATGCTGCAGAATCCACGGAAGGTAGAGAAGCACTATCAGCTGCAGCTTTGAAGTATAGAGTTCCCTGTGCTGAAATACTTGCAGATATTGCTGCGTATTGCAATGTGAGAAAGCTAGCTAGTAGAAATGTTAAGGATGCCTGTGATAAACTTTACATATGGTTTCTCTTGAAGAAGAAGGAGGTGTTATTGTCAGAAGCAAGAATACTGGGACTAGGCCCAAAATTCATGTCAATCTATATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGAAGTTGAAGGCTTGGCCGTGGAATGGCTTGAGGCAACATCCACTTTGGTGCTTAGCATGTGTCCTACTAATAGGCGTGCATTTAGGAGGGGAAGCCCTAACAAGTGGAGGGCATTTGAAGAATTTTCACTTCTGACTTGTCCATGTAACATAAAAGTTACCATGGATAATTCTAATCAAAGTGATGATTGTAAAGTGGATGATAGTATATCTGCCATGGACAGCGTGCCAATTTCCAGATTGGACAGCTCAGATACTGAAATTGAACCTGCAGTTTTTCCGCTCACAGTGCGTCTTCTTTCAACAATTCCAGTAGCGCTTCATGCTGTTGGGGGTGATGATGGGCCCCTTGATATTGGAGTGAGGTTGTACATGAGCTCCTATTTTGGGTAA 3411 0.4125 MRAAVEGSMTERFDDGEKEKKKKRRSNRRSKQNPPSSSASEVNETHGVSSECPGKNGAPTHTTASLSNSLKQQGVNVCSPNEQGLSKASNVACISLPPLHNSELAEPVDLQNMKIHGGGIDSKSFSEPTGWRGSSGTNKNKDSVPCGQIGPCAQRNYFSPHWSAEVVEKALERGDVLKALFHVNAHNRLEAYCKIDGVPTDILIGGIPAQNRAVDGDIVAIKIDPLPLWTKMKGPNGNSNNTATLEGCNLAEDDEVGDNNCKGKGKVDADYESAHSRSCPGQNKEDSDNNSTPYKSHPFPEKRYLYGDNTSHGSTTHLDPLGLANCDSIDGHHCSASDSLKINSYSAQSEVINAVEKLSLLVNSFPSKRPTGRVVAVIERSPRREGIVGHLSLKSWASFRDNSKKDVKKNKNMVSEHEYIQMTPTDPKFPNLMLRIRELPECIKKRLKSGDVTIEMDLVAAQIDDWVEESPLPEGHILHIFGRGGEVQPQLDAILFQNAICLSEFSPEVLSCLPCVPWELPVKEMQSRIDLRNLCIFTIDPSTATDLDDALSIEKLPNGNFRVGIHIADASYFVVPDSALDREAQFRSTSVYMLQKKLPMLPAIFSENVGSLNPGVDRLAVSMLLDITVAGDVVDRWIGRTVIQSCCKLSYELAQDIIDGTFDFESSNFYEDDYPKVHGRFEWPEVISSLKSLYEISEVLKHKRFTDGALRLDNPKVVILFDENGIPYDSMFSERRESNFLVEEYMLLANVTAAEVICRAYPNVALLRRHPDPNMRKLREFMAFCQKHGLELDTSSSGQFHRSLEQIKEMLKDDPVLYDILISFATRPMQLASYFCSGDLKDNEHEWGHYALAVPFYTHFTSPLRRYPDIVVHRTLLAAIEAEELYMKHQKALEVFKEVEVQKRCFTGINFDKNAAESTEGREALSAAALKYRVPCAEILADIAAYCNVRKLASRNVKDACDKLYIWFLLKKKEVLLSEARILGLGPKFMSIYIQKLAIERRIYYDEVEGLAVEWLEATSTLVLSMCPTNRRAFRRGSPNKWRAFEEFSLLTCPCNIKVTMDNSNQSDDCKVDDSISAMDSVPISRLDSSDTEIEPAVFPLTVRLLSTIPVALHAVGGDDGPLDIGVRLYMSSYFG. 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02140 1136 Gene3D - 152 246 - -
Seca8g02140 1136 SMART RNB_2 528 882 IPR001900 GO:0003723|GO:0004540
Seca8g02140 1136 MobiDBLite consensus disorder prediction 272 304 - -
Seca8g02140 1136 MobiDBLite consensus disorder prediction 276 296 - -
Seca8g02140 1136 MobiDBLite consensus disorder prediction 1 64 - -
Seca8g02140 1136 SUPERFAMILY Nucleic acid-binding proteins 156 380 IPR012340 -
Seca8g02140 1136 MobiDBLite consensus disorder prediction 127 142 - -
Seca8g02140 1136 SUPERFAMILY Nucleic acid-binding proteins 490 972 IPR012340 -
Seca8g02140 1136 PANTHER RIBONUCLEASE 20 1133 - -
Seca8g02140 1136 MobiDBLite consensus disorder prediction 7 21 - -
Seca8g02140 1136 MobiDBLite consensus disorder prediction 119 142 - -
Seca8g02140 1136 FunFam DIS3-like exonuclease 2 404 486 - -
Seca8g02140 1136 SUPERFAMILY Nucleic acid-binding proteins 371 500 IPR012340 -
Seca8g02140 1136 FunFam DIS3-like exonuclease 2 148 252 - -
Seca8g02140 1136 ProSitePatterns Ribonuclease II family signature. 849 873 IPR022966 -
Seca8g02140 1136 Hamap DIS3-like exonuclease 2 [DIS3L2]. 18 1111 IPR028591 GO:0000175|GO:0034427
Seca8g02140 1136 Pfam Dis3-like cold-shock domain 2 (CSD2) 419 498 IPR041505 -
Seca8g02140 1136 Pfam RNB domain 528 880 IPR001900 GO:0003723|GO:0004540
Seca8g02140 1136 Gene3D - 403 486 - -
Seca8g02140 1136 MobiDBLite consensus disorder prediction 31 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02140 Seca-Chr8 46921821 46928753 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02140 K18758 - gmx:100815252 1817.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02140 8 46921821 46928753 Seca8g02140 8 46921821 46928753 ECH