Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02124 ATGGCACTCCATCTTCAAATGATTTTACCAATCTCTTTGGTTCTAGCAATAATTTTATCAGGGCAAAGAACATGTGAGTGTGCTAGAGTTTTCACTATAGTAAACTATTGCAAGGAGACACTATGGCCAGCGGTTACACCAGGGGACAACTTCAACGGTGGAGGATTTGTTCTAAAGCCAGGTCAATCTCAAGTGTTCACTGCCCCAGTTGGTTGGAGTGGTCGAATTTGGGCTCGAACAGGTTGCAACTTTGACAAAAACGGTAATGGAACATGCCAAACAGGTTCATGTGGCTCTACTCTGAAATGTTCTGGCTCAGGGAAAACCCCTGCATCACTAGCTGAATTCACACTTGCACAATTGGATTTTTATGATGTTAGCCTCGTTGATGGCTTTAACGTGCCGGTGTCAGTTAAGCCTATAAATGGAAGGGGAAATTGTACCACTGCTGGTTGTGACTCTGACCTTAGATTTAGCTGTCCTAAAGAACTTTCTGTTAAGGTTAACGGCAAGACCGTTGGGTGTAGAAGTGCTTGTGATGTGTTTGATGCTGATGAGTATTGCTGTAGAGGGGTTTATGGGAACCCTGTTACTTGTAAACCAACGTTTTATTCCAAGAAGTTTAAGGAGGCTTGCCCAACTTCTTATAGCTATGCTTATGATGATCCAACTAGTATTTTCACTTGCTCTGGGACAGATTATGTCATAGCCTTCTGCGCTTCCAGGTTCAGCGTTCCTGAGGCTGCACCTTTCACTGCCGTTCTCAAATTTGCAGCCGAAGAATTCAAAGTTCCTCCCCAGACCAGCGCTATTATCACCAATGATGGTGTTGGGATAAATCCTCAGCAAAGTGCAGGAAATGTCTTCCTTAAGCATGGTTCAGAACTGCGTCTGATTCCGCGTGATAGGGTTGGTGCATCTGAGATGTTAAGGGATGTCTGA 942 0.4427 MALHLQMILPISLVLAIILSGQRTCECARVFTIVNYCKETLWPAVTPGDNFNGGGFVLKPGQSQVFTAPVGWSGRIWARTGCNFDKNGNGTCQTGSCGSTLKCSGSGKTPASLAEFTLAQLDFYDVSLVDGFNVPVSVKPINGRGNCTTAGCDSDLRFSCPKELSVKVNGKTVGCRSACDVFDADEYCCRGVYGNPVTCKPTFYSKKFKEACPTSYSYAYDDPTSIFTCSGTDYVIAFCASRFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGASEMLRDV. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02124 313 ProSiteProfiles Thaumatin family profile. 28 239 IPR001938 -
Seca8g02124 313 SUPERFAMILY Ubiquitin-like 243 305 IPR029071 -
Seca8g02124 313 Pfam Thaumatin family 35 239 IPR001938 -
Seca8g02124 313 PANTHER OS03G0233200 PROTEIN 21 239 IPR001938 -
Seca8g02124 313 FunFam Ubiquitin-fold modifier 1 229 307 - -
Seca8g02124 313 FunFam Thaumatin-like protein 1a 29 240 - -
Seca8g02124 313 Pfam Ubiquitin fold modifier 1 protein 243 299 IPR005375 GO:0071569
Seca8g02124 313 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Seca8g02124 313 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Seca8g02124 313 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Seca8g02124 313 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Seca8g02124 313 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Seca8g02124 313 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Seca8g02124 313 SUPERFAMILY Osmotin, thaumatin-like protein 30 240 IPR037176 -
Seca8g02124 313 Gene3D - 202 307 - -
Seca8g02124 313 Gene3D Thaumatin 30 199 IPR037176 -
Seca8g02124 313 SMART tha2 31 240 IPR001938 -
Seca8g02124 313 CDD TLP-PA 30 239 - -
Seca8g02124 313 CDD Ubl_UFM1 243 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02124 Seca-Chr8 46414599 46428147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02124 7 244 Receptor kinase-like Gene Family AT5G38280 41.732 1.39e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02124 - - gmx:100782658 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02124 8 46414599 46428147 Seca8g02124 8 46414599 46428147 ECH