Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02100 ATGGCTCAAGTGGGTTCTCTCTCAGCTGAAATAGAGACACTGAATCATGTCCTATCACTAGTGGAAGCATTCAGAGCATTCGACGCAGACAATGATGGGCGCATCACAGAGGCAGAGCTAGGAGGAATCATGGGTTCACTTGGGTACAATGCTAGTGAGCAAGAAGTGAGAGCAATGATGCAACAAGGGGACAAGAACAAGGATGGACTACTAAGCATAAATGAGTTCTTGGAGCTGAACACAAAGGAATTGGAGACAGGAAATCTCGCAAATGCCCTCAGCGCAGCGTTTGAAGCGTTGGATGAAGATGGGAACGAGATTTTGACAGGGGAAGAGCTACATGAGGTCGTGGCAAATTTGGGTCTTGGGTTGTCTCTAGAAAAGTGTCACAATATTGTGGCTTCTCTTGATGTGGATGGAGATGGAGCTGTCAGCTTGGATGAATTCCGACTCATAGTCGATTCACTCCTCTAA 474 0.4662 MAQVGSLSAEIETLNHVLSLVEAFRAFDADNDGRITEAELGGIMGSLGYNASEQEVRAMMQQGDKNKDGLLSINEFLELNTKELETGNLANALSAAFEALDEDGNEILTGEELHEVVANLGLGLSLEKCHNIVASLDVDGDGAVSLDEFRLIVDSLL. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02100 157 Gene3D - 85 156 - -
Seca8g02100 157 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 19 78 - -
Seca8g02100 157 FunFam Calmodulin-3 9 155 - -
Seca8g02100 157 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
Seca8g02100 157 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Seca8g02100 157 SMART efh_1 55 83 IPR002048 GO:0005509
Seca8g02100 157 SMART efh_1 19 47 IPR002048 GO:0005509
Seca8g02100 157 SMART efh_1 92 120 IPR002048 GO:0005509
Seca8g02100 157 SMART efh_1 128 156 IPR002048 GO:0005509
Seca8g02100 157 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Seca8g02100 157 Pfam EF-hand domain pair 93 150 IPR002048 GO:0005509
Seca8g02100 157 Pfam EF-hand domain pair 21 78 IPR002048 GO:0005509
Seca8g02100 157 SUPERFAMILY EF-hand 15 152 IPR011992 -
Seca8g02100 157 Gene3D - 5 84 - -
Seca8g02100 157 CDD EFh 20 79 IPR002048 GO:0005509
Seca8g02100 157 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Seca8g02100 157 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Seca8g02100 157 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Seca8g02100 157 ProSiteProfiles EF-hand calcium-binding domain profile. 124 157 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02100 Seca-Chr8 45703779 45704252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02100 17 153 EF-hand Containing Proteins AT1G24620 37.226 4.29e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02100 - K02183 gmx:100782291 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02100 8 45703779 45704252 Seca8g02100 8 45703779 45704252 ECH