Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02012 ATGTTCACAATACCTGATGATTTCGCCATGAGAAAGGAAGAACTTGGAACGTGGTTGAACACTATTTCTAATCCTGATTCACCACTATCACAGTCGTTTTTCGACCTTCACCCTGGCCACATGGTCCCTCTCACGTCGAAATCTTCTCCTAACTCGAGCTCTCTATCCAATGGGTTACGTTTTTGCGGCGATGGGATCATGTACAGTGGAGATGATAACTGGGTGAACGTGAATGTGAACGATTTTGTTGATGATAGTTTGCAATTGTCAAGGGACTTTTCAGGATTGAGTATTTTGGATGAACAAGGGAGTAATAATAACAATGGTGCCAAAATCAGCTACCCCATGTCATTCTTGGATGCACATGTACATAACGTTGTTGCTGATGAAATGGGTCAACAACGCACCTTCAATCATAATGTGGGTACCTCAAAATCTTCTTGGGGTGTTTCAGTTAATTCGCCAGGTTTAGTCACTGATGTGAAGTGGGCATTGCCTTCTTCGGCTAAAGGTAACATTTTTGGAACCCCAATGGAGTCTTCTTTTGGGAACGGTTATGGACATAGTCAACCTCAGAAGCCAGCATCTTTTGTTTCACCTTACCCTTGTGAACGTTTTGTGTGCACACCTAGAAGGGTTTATGGAATTGAAAGTGGTCCAGGATGGGGTTCTGCAGCTACAAATACTCCCTTTTTATTGTCTCAAACCATGCAGCAACCTAAGCATGGTATGAATCTGAATGTACCATCATCATCACCATCACCATTATCACAACTTCCTCAATCTCTCTCTCCAGTGAGAGGGGACCCTTTGGCATTTAGATGTGATAATAGTTTTATAATACAAGAAAGAGATATGAAACGTTTTGCTGACAATGGGTGCAATTCTTCTATGTGGGGTGGTAGAAAGTACCCCAATAACCGTGAGGTTGGGGTTGGGATTCCAGTTATGGGAGAGGAAATTCCTCAGCTGGTTCCTCGTGTTCCTCTTAGGCATGAAAATTGTAGCACCCTTGCTAGTGATGTGCCACAGCCTTCACAGCTCAATTTTGGTTCTTTAGGTGATATTCAAGGTTACATGTATCCCTTGGCTAAGGATCAGAATGGTTGTCGCTTCCTGCAGAAAATGGTTGATGAGGGAACCTCTGAAGATATGCAGACAGTGTTCAATGGAGTCATAGATAATGTTGTTGAGCTTATGATGGACCCTTTTGGGAATTATCTGGTGCAGAAGCTGCTGGATGTATGCAGAGAAGAACAAAGGTTGCAGATTGTGCTAATGTTGACCAAAGAACCAGGGCAGCTAGTCAGAACCTCGTTGAACACACATGGCACACGCGTGGTTCAGAAGTTGATTGGGACCCTCAACTGTAGGGAACAAATTTCTCTAGTGAGGTCCGCTATTCAACCTGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAATCATGTTATACAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATGAGTTTATTTTTGATGCTGCTGCAAAGTTCTGTGTTGAAATAGCTACTCATCAACACGGTTGCTGTGTACTGCAACGCTGCATTGATTACTCCACCGGAAAGTGTCAAGATAAGCTGGTCAAAGAAATATGCAAACATGGCCTTCTCCTTGCTCAAGATCCATTTGGAAACTATGTTGTTCAGTATATCATTGAGATGGAGAACCCAAGTGCCTCTGCCAAACTGCTTTCTCAGTTCAAAGGGAACTATGTGAGCCTCTCCACTCAAAAATTTAGCAGCCATGTGGTTGAAAAATGCCTCAAGCATATTGGAGAGAGCAGATCCAGGATAGTCCAAGAATTGCTGGCTCTTTCTAACTTTGAGCAGTTGCTGCAAGACCCATATGCTAACTATGTTGTTCAACGTGCTCTCTCAGTCACCAAGGGTGCTCTGCATGCATCTTTGGTTGAAGCAGTTCGCCCCCACAAAATGTTGCGCACTAGTCCATATTGCAAGAGGATTTTCTCAAGGAATCTGCTTAAGAAGTAA 2019 0.4309 MFTIPDDFAMRKEELGTWLNTISNPDSPLSQSFFDLHPGHMVPLTSKSSPNSSSLSNGLRFCGDGIMYSGDDNWVNVNVNDFVDDSLQLSRDFSGLSILDEQGSNNNNGAKISYPMSFLDAHVHNVVADEMGQQRTFNHNVGTSKSSWGVSVNSPGLVTDVKWALPSSAKGNIFGTPMESSFGNGYGHSQPQKPASFVSPYPCERFVCTPRRVYGIESGPGWGSAATNTPFLLSQTMQQPKHGMNLNVPSSSPSPLSQLPQSLSPVRGDPLAFRCDNSFIIQERDMKRFADNGCNSSMWGGRKYPNNREVGVGIPVMGEEIPQLVPRVPLRHENCSTLASDVPQPSQLNFGSLGDIQGYMYPLAKDQNGCRFLQKMVDEGTSEDMQTVFNGVIDNVVELMMDPFGNYLVQKLLDVCREEQRLQIVLMLTKEPGQLVRTSLNTHGTRVVQKLIGTLNCREQISLVRSAIQPGFLDLIKDLNGNHVIQRCLQCLSCQDNEFIFDAAAKFCVEIATHQHGCCVLQRCIDYSTGKCQDKLVKEICKHGLLLAQDPFGNYVVQYIIEMENPSASAKLLSQFKGNYVSLSTQKFSSHVVEKCLKHIGESRSRIVQELLALSNFEQLLQDPYANYVVQRALSVTKGALHASLVEAVRPHKMLRTSPYCKRIFSRNLLKK. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02012 672 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 334 672 IPR033133 GO:0003723
Seca8g02012 672 ProSiteProfiles Pumilio RNA-binding repeat profile. 391 427 IPR001313 GO:0003723
Seca8g02012 672 ProSiteProfiles Pumilio RNA-binding repeat profile. 539 574 IPR001313 GO:0003723
Seca8g02012 672 Pfam Pumilio-family RNA binding repeat 472 502 IPR001313 GO:0003723
Seca8g02012 672 Pfam Pumilio-family RNA binding repeat 619 636 IPR001313 GO:0003723
Seca8g02012 672 Pfam Pumilio-family RNA binding repeat 508 541 IPR001313 GO:0003723
Seca8g02012 672 Pfam Pumilio-family RNA binding repeat 395 425 IPR001313 GO:0003723
Seca8g02012 672 Pfam Pumilio-family RNA binding repeat 435 458 IPR001313 GO:0003723
Seca8g02012 672 Pfam Pumilio-family RNA binding repeat 546 572 IPR001313 GO:0003723
Seca8g02012 672 Pfam Pumilio-family RNA binding repeat 579 612 IPR001313 GO:0003723
Seca8g02012 672 Pfam Pumilio-family RNA binding repeat 360 390 IPR001313 GO:0003723
Seca8g02012 672 SUPERFAMILY ARM repeat 352 666 IPR016024 -
Seca8g02012 672 ProSiteProfiles Pumilio RNA-binding repeat profile. 610 647 IPR001313 GO:0003723
Seca8g02012 672 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 167 667 - -
Seca8g02012 672 SMART pum_5 612 647 IPR001313 GO:0003723
Seca8g02012 672 SMART pum_5 391 426 IPR001313 GO:0003723
Seca8g02012 672 SMART pum_5 539 574 IPR001313 GO:0003723
Seca8g02012 672 SMART pum_5 467 502 IPR001313 GO:0003723
Seca8g02012 672 SMART pum_5 503 538 IPR001313 GO:0003723
Seca8g02012 672 SMART pum_5 430 465 IPR001313 GO:0003723
Seca8g02012 672 SMART pum_5 575 609 IPR001313 GO:0003723
Seca8g02012 672 SMART pum_5 355 390 IPR001313 GO:0003723
Seca8g02012 672 CDD Pumilio 352 667 IPR033712 GO:0003723
Seca8g02012 672 Gene3D - 338 670 IPR011989 -
Seca8g02012 672 ProSiteProfiles Pumilio RNA-binding repeat profile. 355 390 IPR001313 GO:0003723
Seca8g02012 672 ProSiteProfiles Pumilio RNA-binding repeat profile. 503 538 IPR001313 GO:0003723
Seca8g02012 672 ProSiteProfiles Pumilio RNA-binding repeat profile. 467 502 IPR001313 GO:0003723
Seca8g02012 672 FunFam Pumilio homolog 9 344 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02012 Seca-Chr8 42686370 42691411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02012 - - pcin:129297951 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02012 8 42686370 42691411 Seca8g02012 8 42686370 42691411 ECH
Seca8g02012 8 42686370 42691411 Seca8g02012 8 42686370 42691411 PCT