Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02000 ATGCAGAAGCTTGGATTCCCAATCTCCAAGAGCCTCGACCAATTCAAATCGTTGTACGGTTCGGCATCAGGAACTGCGAAGACATTACCCTCGCTCTCTTCGCGTCCTTCCGCAGATTCTATTGCATCGGGAAGTTTCGCGAATCTGAAGCTTACAGCAGAGAAATTGGTGAAAGAACAAGCTTCGGTGAAGACTGACCTTGAAATTGCGAATACTAAGCTTAAAAAATCGCTGGAGCATATCAATGCACTAGAAGAAAAATTGCAGAACGCTTTTAACGAAAACGCGAAGCTCAAGGTCAAGCAGAAGGAAGATGAGAAACTCTGGAAAGGACTGGAATCTAAGTTCTCATCCACCAAGACTTTGTGTGATCAACTTACTGAGACTTTACAACAGTTGGCTGGTCTAGTTCAGGATGCCGAGAAAGATAAGGACACGTTGCAAAATAAACTGTCAGCAAGTTCAGAAGCTCTTGATAGCTTGAATAAACAGATGGATGGTTTGTCTTTGAAGCTAGATTCTGCACAGGAAACAATTAATACTCGTGATAATGAGCTAGTGAAGCTCAAATTTATTACGGAAGAAAGGGAGAAGTTTCACAGAGATGAACAGTGTAGAGCTGCCAATGTTATACAAGAGAAGGATATTACAATAAATAATTTAGAAGAAATGTTAAAAGCTAGTAGATTGGATATAGAGAATATGAACGCAAAGATGGGAGAGGTTCATCTTCAGTTAAAAGTCAAAGAAGATGAAATTATGCATCAAATGACCAGTCAAGAGACATTGGAGAAAGAAAAGAATGATCTTCAATTGTGTAATGCGGAGCTTGCAGAAAAGCTTGACATGTCACTTCAGGAAATAAAAAACCTTGAAGGATCACTTCAGGTGTTGGCTACACATTTGTTAAATTTAGACAAAGAAAGCTTGAACCTTTTGAGCAAGTTTGATGAAATGAACTCTCTCTATGCTTCTTGCTTCAAGTTGGTACAGCAGGAGAGAGAAATATTCTCTAAGCATGCTCACAACCAGTATGGTGAGCTTAATAAAAAATTCTTGATCTTGGCATCAGAAAAGGATGAAATTCAAATGAAAAATCAGGAGTTAAGCAGTAGTGTGAACGAGCTTCAGAAAGTCCAAGATTCTACTGTAGCTCAGCATAAAGTGGACTGTCGATTAGCAGCTGAGAGAATTCAGCATTTGGAATCAGAAGCTGAAACTTTAATCTCGAAAAAGGCAGAAGCAGAGGTCATAATTTCCAAATTAGAGGAGAAAGCTGAAATTCTGTTAGAAAGTTCTAGATCATCAGAGAACCAAATGAAAGGTTTACTTCTAAAAGTTTCAGCATTAGAGACTGAAAGCAAGGAAAATATGGAAAGACTGCAGGCAGAGATATTGAAAAAATCAGAGGAAATAGATACTCTGCAAAAGGAGAGAATGAAACTAGAGCAGCATGCGGATTCTCTTGATAAAGAAGTCAACCAGCTTCACAGTGTATTAGAGGAAAAAGAACAGTGTATTTTTCAGTATAAGGAACAGGAAAAGAAGCTGGAAGGCCAGATCATTGAGAATCAGTCATTATTGACTGCTGCTGAAAGTAAACTTTCAGAAGCTAGAAAGCAATACGATCAAATGGTAGAGAATAAACAGTTGGAATTATCAAAGCATTTGAAAGAAATATCTCAAAGAAATGATCAGGCTATTAATGACATTAAGAAGAAGTATGAGTTGGAGAAGATGGAAATTATCAGCATGGAAAAAGACAAGGCTGACAAGGCTATTGCAGAAATTGAGGCAAGGTGTAACCAAAAACTTGCAGAAGGAAAAGAAGAATCAAGGCAGCAGTTGATGCGCATTCAGGACGAACATTCTGTACTGGTTACACAAATGCAGAAGGAGCATGACAAGAGGGAACTGAGCCTGATAGCTGAACACAGTGAACAGCTAAAGCGTACCCAACTGCAAGCTGAAAATGAACTGAGAGAGAAAACAATGTTCCTGAGGAGTGACCATGAAGCTCAGATGAAAGCATTGAGGTGCGAACTCGAAGATGAGTGTCGGAAGCTGGAAGAGGAGTTGCATCTTCAGAAATCAAAAGAAGACAGGCAAAGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGATAAGCCAAAAGAGGATCAAGAAGTGAATTCAAAACAGGATTACTCCATTTCATCAATTAAGAGAAGGAGTTCTTGTGGTGGTAAAAGAAATCAGCATGACCGAGACTCTCCTTACTTTGAAACAACAGAAACACCAGTGCCAAAGTTGTTGAAGAAAGTGGAGAATGTAAAAACAGGAAGTGCAATGAGCATCCCTAAGCATCATAGAAAGGTAACACGCCATGAATATGAGGTCGAGACTTCTAATGGAAGAACAATAACAAAGAAAAAGAAAACAAGAAGTACTGTCTTGTTTGAGGCATGTATCTGTTTCTCTCTAAATGCTATTAACCCTTTAGATGACCCAAGAAAACAAAAGATAACTACACCTAAAACAAATGCCCCAGGAAGTGTTGTTAAGAGCATGAAGGGAGGAGGCAATCCTCATCCTTCAAATATGGGTGATTTGTTTTCAGAAGGGTCTCTGAATCCATATGCAGACGATCCCTATGCATTTGATTAG 2649 0.3911 MQKLGFPISKSLDQFKSLYGSASGTAKTLPSLSSRPSADSIASGSFANLKLTAEKLVKEQASVKTDLEIANTKLKKSLEHINALEEKLQNAFNENAKLKVKQKEDEKLWKGLESKFSSTKTLCDQLTETLQQLAGLVQDAEKDKDTLQNKLSASSEALDSLNKQMDGLSLKLDSAQETINTRDNELVKLKFITEEREKFHRDEQCRAANVIQEKDITINNLEEMLKASRLDIENMNAKMGEVHLQLKVKEDEIMHQMTSQETLEKEKNDLQLCNAELAEKLDMSLQEIKNLEGSLQVLATHLLNLDKESLNLLSKFDEMNSLYASCFKLVQQEREIFSKHAHNQYGELNKKFLILASEKDEIQMKNQELSSSVNELQKVQDSTVAQHKVDCRLAAERIQHLESEAETLISKKAEAEVIISKLEEKAEILLESSRSSENQMKGLLLKVSALETESKENMERLQAEILKKSEEIDTLQKERMKLEQHADSLDKEVNQLHSVLEEKEQCIFQYKEQEKKLEGQIIENQSLLTAAESKLSEARKQYDQMVENKQLELSKHLKEISQRNDQAINDIKKKYELEKMEIISMEKDKADKAIAEIEARCNQKLAEGKEESRQQLMRIQDEHSVLVTQMQKEHDKRELSLIAEHSEQLKRTQLQAENELREKTMFLRSDHEAQMKALRCELEDECRKLEEELHLQKSKEDRQRALLQLQWKVMSDKPKEDQEVNSKQDYSISSIKRRSSCGGKRNQHDRDSPYFETTETPVPKLLKKVENVKTGSAMSIPKHHRKVTRHEYEVETSNGRTITKKKKTRSTVLFEACICFSLNAINPLDDPRKQKITTPKTNAPGSVVKSMKGGGNPHPSNMGDLFSEGSLNPYADDPYAFD. 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02000 882 MobiDBLite consensus disorder prediction 829 882 - -
Seca8g02000 882 Coils Coil 668 688 - -
Seca8g02000 882 Coils Coil 359 379 - -
Seca8g02000 882 Coils Coil 580 622 - -
Seca8g02000 882 Coils Coil 528 548 - -
Seca8g02000 882 Coils Coil 218 238 - -
Seca8g02000 882 Coils Coil 67 101 - -
Seca8g02000 882 Coils Coil 391 439 - -
Seca8g02000 882 Coils Coil 642 662 - -
Seca8g02000 882 Coils Coil 451 492 - -
Seca8g02000 882 MobiDBLite consensus disorder prediction 716 757 - -
Seca8g02000 882 SUPERFAMILY Tropomyosin 79 311 - -
Seca8g02000 882 Coils Coil 260 294 - -
Seca8g02000 882 Coils Coil 500 520 - -
Seca8g02000 882 Coils Coil 123 178 - -
Seca8g02000 882 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 36 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02000 Seca-Chr8 42516121 42527094 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02000 - - gmx:100788684 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02000 8 42516121 42527094 Seca8g02000 8 42516121 42527094 ECH