Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01906 ATGTCAAGGGAAGAGGAAGTTGTGAACCCAACCCCAGAAACAGGGAATACCCAATCCCAGCAACCTGGAGAACTGCAGAATATTCATTCTGCATATAGACTAAATGGAAGAAATTATTTGAAGTGGGCCCAACTTGTTCGTACAGTGTTGAAGGGAAAGGGGAAGTTGAGTCACCTGACGGAGTCTGGACCTAAACAGGAGGATCCCAAGTTTACTACATGGGATGAGGAAGATTCAATGATCATGGCGTGGCTGTGGAATTCAATGATTCCAGAAATCAGCGACACCTGCATGTTCCTTAATTCGGCAAAAGAGATTTGGGATGCTGTAGAGCAAACCTACTCTACAGCCAAAGATGCTGCTCAAGTATATGAAGTAAAGGTGAAAACTTTGGCAGCAAAACAAGGGAACAAGACTGTTACAGAATATGCCAATCAGCTGAAATCATTATGGATGGAGCTAGACCATTATAGAGTCATAAAAGCCAAATGTACTGAAGATTCAGCACTTCTCAAGGAGTATATCGAACAAGACAGAGTTTATGATTTCCTTGTTGGTTTGAATCCTGAATTTGATCAAGTTAGGATTCAAATATTGGGGAAGCAAAAGGTACCATGCTTTAATGAAGTGGTGGCTATTGTGAGAAGTGAAGAAAGTAGAAGGGGTCTCATGTTAGAGAGTCCAGCAGTAGAGAACTCAGCAATGGTGGCTGACCATAAAGGAGATCAGACTTTGGCCATGGTAGCCGAACAGAAGAAAGGAGGATCAGCAAATGTGGAGAAGAAAAGTGATGGTCTCTGGTGTACCTACTGCAATAAGCCTCGTCATACCCGAGAGAAGTGCTGGAAGTTGTATGGGAAGCCTTTAAATCGAGATCGAGAAGGGGGACACAGAGGAGGCTCCTCAAGGAAAGGAGGACAAGTTTATGTTGCTGCTGGAACAAATGAAGAAAATAAACCAGAAGCTGCTGACCATTTTAACCAAGAGGAGATAGAAAGGGTGAGAACCTTTCTTAGTAAGCTGGAAAAACCTCCAGGTGTGTGTTCTTTGGCATACTCAGGTAAGTTTCCACTTTCTTTTGGATTTAATGTCTCAGATACACCCTTTAACCATTATTGGATATTGGACTCTGGAGCTACAGACCACATGACACCATTAGCCAAACACTTCTCCACATATTCCCCATGTCCCAGCAACAAGAAAATTGCCACAGCAGATGGAACCCTTATAACTGCAGCTGGTCAAGGAAATATCCAAATCAATCCTTTAATAACCTTAAAAGATGTTCTCCATGTCCCAAAGCTGTCCACCAACCTAGTCTCTATACAAAAACTTATAAAGGATGTGTCATGTAAAGTTGTTTTTTACAACGATCATTGTGTATTTCAGGACAAGGATTCGGGGAGGACGATTGGACATGCTAGAGAATGGAATGGCCTTTATTATCTTGAAGATCCAAGTCTGTCCAGCAAGAACAGAATCTCTCACTCCTTCATATCTGAATCTTTGATGACCAACAGAGAAAAAATCATGCTTTATCATTGTCGGTTGGGACATCCCTCTTTTGGAGTGATCAAAATTATGTTTCCCTCTCTGTTTACCAAGTTAGATGTTGAGAGTCTTCATTGTGAGGTGTGTGAACTTGCTAAGCACAAGCGTGTATCTTTTCCAATAAGTAATAAAATTAGCAATTTCCCCTTTTATCTTGTTCATACTGATGTATGGGGGCCTTCTAATGTTCCAAATGTGTCTGGTGCTCGATGGTTTGTCACCTTTATAGATGATTGTACAAGGGTCACTTGGGTTTTCCTACTTAAACAAAAATCAGAAGTCAGTTCTGTCTTCCTAAACTTCGATTCCTTGATAAAAAATCAGTTTGGTGTTAATATTAAGAGGCTTAGGTCAGATAATGCCAAAGATTACTTCAATCATGTCCTTAATTCTTTTTGTCAAAAAGAAGGTATAATTCATGAGTCTTCTTGTGTCAAAACACCACAGCAGAATGGGGTCGCAGAGAGGAAAAATGGGCATCTATTAAATCAGACTCGGGCATTGTTGTTCCAAAATAGTGTCCCAAAAAATTTCTGGGGGGAAGCTGTTCTTACAGCAACACACCTTATCAATAGACTACCCTCTAGAGTCTTAGGATCAAAAAGCCCTATGGAAGCTTTGTCGTCTTTCTATCCAAACCTGTCCACTACAAATAATCTTAAACCAAGAGTTTTTGGGTGCATCTCATATGTCCATATTCATAGTACAGACAGGGGGAAACTTGATCCTAGAGCCTTAAAGTGTGTCTTTGTTGGTTACTCATCCACTCAGAAAGGGTATAAATGCTACCACCCCCCATCCAAAAAATTCTTTGTGTCTAGGGATGTTACCTTCAATGAACAAGAGGGCTATTTCCATCAACCTTATCTTCAGGGGGAGAGTTTCAGGGAAGATAAGGAAAGTAGTAATTCTGGTTTTCCCATTCCTCCAGACTTGACAGACTTGATATTTGAACCTAAACTAGATCAAATTGAAGCTGTAACAAGTGAAACAAGTCAAGGAAGTGAAGCTGGTCAAGAAAAGGAAGCTGGTCAAGAAAGTGAAATTAATTGTGAAGCTGATCAAGGAGATGTTGAAGCTGGAAAATTTGGTAAGAAGCTGGTGTACTCAAGGAAGACTAAGGCCATTCCAGGATCAAGCCATGTTCAAGAATCCAACTCGACTCCACAAAAAGAGGTAACAATTTTTTCTCCAGCTGTGCAGGTTGAAATTGAAACCCAAAATGATCTTGATCTCCCAATTGCCATTAGAAAAGGGACAAGAAAATGCACCAAACAGCCACTCTACCCTCTCTCAAATTACCTGTCCTTTGAAAATTTCTCTCCTACCCATAAAACCTTCCTAGTAAACCTAAACACTACACTTCTACCTAATACCCTATCTGAGGCATTGTCTGACAGAAAATGGAGGCAAGCCATGGATGTAGAGATGGAGGCATTGGAGAAGAACACCACCTGGGAGTTAGTCACCTTACCAATAGGAAAGAGGCCAGTTGGATGTAAGTGGGTCTATACAGTGAAATACAAGGCTGATGGATCAATTGAGAGATATAAGGCAAGACTAGTTGCCAAAGGGTTCACCCAAACCTATGGAGTTGATTATTTGGAGACCTTTGCTCCGGTTGCCAAAATGAACACAGTTAGGGTGATATTGTCTCTTGCTGCCAATTATGGTTGGAACTTGGAACAATTTGATGTTAAGAATGCTTTCCTACATGGAGACCTTGAAGAAGAAATTTATATGGAGATACCTCCAGGATATGGTAGAGATGTTGCTGCCAACACTGTTTGCAAGTTGAAAAAGGCATTATATGGGCTAAAACAGTCCCCCCGTGCATGGTTTGGCAGGTTTACTAAAGTTATGACAAGTCTGGGTTACAAACAAAGCCAAGGGGACCATACTTTGTTCTTTAAACATTCCAAGTCAGGGGGAGTAACAATATTATTGGTGTATGTGGATGACATAATATTAACTGGAGATGATAAAGAAGAGCAGCAATTGTTGAGCCAATGCTTGGGCAAGGAATTTGAGATCAAGACCTTGGGAAAACTAAAATATTTTTTGGGAATTGAAGTTGCCCACTCCAAGAAAGGGATATTTATATCCCAACAGAAATATATCACTGATTTGCTCAAGGAAACTGGCAAGGCAGCTTGCAAACCTGCTAGTACCCCATTAGAACCAAACCTAAAGCTTGGAAATGCAGAAAAAGATGTTGCTGTTGAAAAAGAGATGTACCAGCGATTAGTGGGCAGACTTATATATTTGTCTCATACCAGGCCAGATATTGCCTATGCAGTGAGTTTAATTAGCCAATTTATGCATAGCCCAAAGGAGACCCATTTACAAGCTGCCCACAGAATTTTACAGTACCTTAAAGGAACTCCAGGAAGAGGGATTCTATTCAAAAGGAATGGTAATGTGAAGCTTGAAGCCTATACCGATGCTGATTATGCAGGGTCAATTGTGGATAGGAGGTCAACTACAGGATATTGCACCTTTCTTGGAGGAAATCTTGTGACTTGGAGAAGCAAAAAGCAGGGTGTAGTGGCTCGGTCCAGTGCTGAAGCGGAATTCCGAGCCATGGCACAAGGTATATGTGAGTTGCTATGGCTTAAAATCATCTTAGAAGACTTGAGGATAAAATGGGAAGAACCTATGAAACTCTATTGTGATAATAAGTCATCAATCAGCATAGCCCACAACCCAGTGCAGCATGATAGAACAAAGCATATTGAAGTAGACAGACACTTCATCAAAGAAAAGCTTGATAGTGGCTTGATATGCACTCCATATGTGTCCTCTCAAGACCAAATTGCAGACATTCTTACCAAGGGACTGGGCAGCCACAATTTTGAGAAGATTATACCTAAAGGTGTTCAACCAGGACAGCTTCTGGTATTTAGAGGCAAAGGACTGCCAAAGCATGGGTTTCTTGTACATCATGGGGATCAGTATGTGCGTTTCCGCATTAACTTTCCCACTGCAATCAATGAACGACAACGTGCTATACTTGAAGAATTTGCAAAGGAGGAAATAAAGGAGGGAAACAACTCGTCACTTGAAGGAAATTGA 4626 0.4099 MSREEEVVNPTPETGNTQSQQPGELQNIHSAYRLNGRNYLKWAQLVRTVLKGKGKLSHLTESGPKQEDPKFTTWDEEDSMIMAWLWNSMIPEISDTCMFLNSAKEIWDAVEQTYSTAKDAAQVYEVKVKTLAAKQGNKTVTEYANQLKSLWMELDHYRVIKAKCTEDSALLKEYIEQDRVYDFLVGLNPEFDQVRIQILGKQKVPCFNEVVAIVRSEESRRGLMLESPAVENSAMVADHKGDQTLAMVAEQKKGGSANVEKKSDGLWCTYCNKPRHTREKCWKLYGKPLNRDREGGHRGGSSRKGGQVYVAAGTNEENKPEAADHFNQEEIERVRTFLSKLEKPPGVCSLAYSGKFPLSFGFNVSDTPFNHYWILDSGATDHMTPLAKHFSTYSPCPSNKKIATADGTLITAAGQGNIQINPLITLKDVLHVPKLSTNLVSIQKLIKDVSCKVVFYNDHCVFQDKDSGRTIGHAREWNGLYYLEDPSLSSKNRISHSFISESLMTNREKIMLYHCRLGHPSFGVIKIMFPSLFTKLDVESLHCEVCELAKHKRVSFPISNKISNFPFYLVHTDVWGPSNVPNVSGARWFVTFIDDCTRVTWVFLLKQKSEVSSVFLNFDSLIKNQFGVNIKRLRSDNAKDYFNHVLNSFCQKEGIIHESSCVKTPQQNGVAERKNGHLLNQTRALLFQNSVPKNFWGEAVLTATHLINRLPSRVLGSKSPMEALSSFYPNLSTTNNLKPRVFGCISYVHIHSTDRGKLDPRALKCVFVGYSSTQKGYKCYHPPSKKFFVSRDVTFNEQEGYFHQPYLQGESFREDKESSNSGFPIPPDLTDLIFEPKLDQIEAVTSETSQGSEAGQEKEAGQESEINCEADQGDVEAGKFGKKLVYSRKTKAIPGSSHVQESNSTPQKEVTIFSPAVQVEIETQNDLDLPIAIRKGTRKCTKQPLYPLSNYLSFENFSPTHKTFLVNLNTTLLPNTLSEALSDRKWRQAMDVEMEALEKNTTWELVTLPIGKRPVGCKWVYTVKYKADGSIERYKARLVAKGFTQTYGVDYLETFAPVAKMNTVRVILSLAANYGWNLEQFDVKNAFLHGDLEEEIYMEIPPGYGRDVAANTVCKLKKALYGLKQSPRAWFGRFTKVMTSLGYKQSQGDHTLFFKHSKSGGVTILLVYVDDIILTGDDKEEQQLLSQCLGKEFEIKTLGKLKYFLGIEVAHSKKGIFISQQKYITDLLKETGKAACKPASTPLEPNLKLGNAEKDVAVEKEMYQRLVGRLIYLSHTRPDIAYAVSLISQFMHSPKETHLQAAHRILQYLKGTPGRGILFKRNGNVKLEAYTDADYAGSIVDRRSTTGYCTFLGGNLVTWRSKKQGVVARSSAEAEFRAMAQGICELLWLKIILEDLRIKWEEPMKLYCDNKSSISIAHNPVQHDRTKHIEVDRHFIKEKLDSGLICTPYVSSQDQIADILTKGLGSHNFEKIIPKGVQPGQLLVFRGKGLPKHGFLVHHGDQYVRFRINFPTAINERQRAILEEFAKEEIKEGNNSSLEGN. 1542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01906 1541 Gene3D - 558 741 IPR036397 GO:0003676
Seca8g01906 1541 PANTHER GAG-POL-RELATED RETROTRANSPOSON 504 1472 - -
Seca8g01906 1541 SUPERFAMILY Ribonuclease H-like 562 724 IPR012337 -
Seca8g01906 1541 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1000 1243 IPR013103 -
Seca8g01906 1541 SUPERFAMILY DNA/RNA polymerases 999 1431 IPR043502 -
Seca8g01906 1541 ProSiteProfiles Integrase catalytic domain profile. 562 728 IPR001584 GO:0015074
Seca8g01906 1541 Pfam Integrase core domain 566 663 IPR001584 GO:0015074
Seca8g01906 1541 MobiDBLite consensus disorder prediction 7 23 - -
Seca8g01906 1541 Pfam GAG-pre-integrase domain 479 551 IPR025724 -
Seca8g01906 1541 SUPERFAMILY HSP40/DnaJ peptide-binding domain 1468 1522 IPR008971 GO:0006457|GO:0051082
Seca8g01906 1541 CDD RNase_HI_RT_Ty1 1328 1466 - -
Seca8g01906 1541 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g01906 1541 Gene3D - 1458 1538 - -
Seca8g01906 1541 MobiDBLite consensus disorder prediction 845 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01906 Seca-Chr8 39421854 39428176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01906 945 1439 Receptor kinase-like Gene Family AT4G23160 46.293 7.55e-153 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01906 - K12169 zju:125421378 1270.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01906 8 39421854 39428176 Seca8g01906 8 39421854 39428176 ECH