Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01901 ATGGCCGAGTGTATGGTTGCGTTAAACCCTCCCAAAACCCTCCACAGCAAAATTCTACCCAACAATCCCATTTCCCCAGCGTTCAGAAACAGAATCACTTTCAAATCGAGCAAGTTCACTGGCCCAGCAATCCGCGCTTCGGTGATGGGAACAGAAGGTCACCAACAACCATCTTTGGCAGACGCTCTACTCAACAGTACTCGCAAACACCAAGTTCTCGATGCCATCACCGCCTCCCTCCCTAATTGCCTCTCCGAAACTAACCTCCATTTGACAGTTCCTGGTCTCAAATCCAAAACCCGTGGCAAAGTTCGAGATATTTATGATAGTGGGGACTACCTTGTTTTAGTGACCACTGATCGCCAGAGTGCATTTGATAGGATTCTTGCTTCTATTCCTTTCAAAGGCCAGGTTCTTAATCAGACAAGTTTATGGTGGTTTGAAAGAACTAGGCATATAGTTTCTAATGCAGTTGTATCAGCTCCGGATAAAAATGTTACAATAGCAAAGAAATGTTCAGTTTTTCCAGTTGAGTTTGTTGCTAGAGTGTTTGTCACTGGAAGTACTGATACATCTTTATGGACAGTCTACAATAAAGGTGTTCGTAACTATTGTGGAAATGTCATCCCAGATGGAATGGTTAAAAATCAAAAGTTGCCTAAAAATATACTCACTCCAACTACCAAGGCTGAAGATCATGATGTTCCTGTCACTCCAGATGAGATTATAGAAAGGGGACTGATGACTCGAGCTGATTATGCAGAAGCGAGTGAAAAAGCATTAAGTTTGTTTGAATATGGACAGCAAGTGGCTTTGGAACATGGTCTCATATTGGTAGATACTAAATATGAATTTGGGAAGGCAAACGATGGTTCAATTCTGTTGATTGATGAGGTCCATACTCCGGATTCAAGTAGATATTGGATTGCCAATTCTTACTTGGAGCGCTTTCAAAATGGTCTTGAGCCTGAAAATGTTGATAAGGAGTTCTTGAGGTTGTGGTTCAAAAGTCACTGCAACCCCTACGAAGATGAGGTCCTTCCTGATGCTCCTGAAGATCTTGTTTGTGAGTTGGCTTGGCGGTATGTCTGCTAG 1095 0.4256 MAECMVALNPPKTLHSKILPNNPISPAFRNRITFKSSKFTGPAIRASVMGTEGHQQPSLADALLNSTRKHQVLDAITASLPNCLSETNLHLTVPGLKSKTRGKVRDIYDSGDYLVLVTTDRQSAFDRILASIPFKGQVLNQTSLWWFERTRHIVSNAVVSAPDKNVTIAKKCSVFPVEFVARVFVTGSTDTSLWTVYNKGVRNYCGNVIPDGMVKNQKLPKNILTPTTKAEDHDVPVTPDEIIERGLMTRADYAEASEKALSLFEYGQQVALEHGLILVDTKYEFGKANDGSILLIDEVHTPDSSRYWIANSYLERFQNGLEPENVDKEFLRLWFKSHCNPYEDEVLPDAPEDLVCELAWRYVC. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01901 364 FunFam Phosphoribosylaminoimidazole-succinocarboxamide synthase 86 178 - -
Seca8g01901 364 SUPERFAMILY SAICAR synthase-like 90 363 - -
Seca8g01901 364 Hamap Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 96 364 IPR028923 -
Seca8g01901 364 Pfam SAICAR synthetase 100 345 IPR028923 -
Seca8g01901 364 Gene3D - 178 319 - -
Seca8g01901 364 Gene3D Phosphorylase Kinase; domain 1 86 177 - -
Seca8g01901 364 ProSitePatterns SAICAR synthetase signature 1. 174 188 IPR018236 GO:0004639|GO:0006164
Seca8g01901 364 ProSitePatterns SAICAR synthetase signature 2. 278 286 IPR018236 GO:0004639|GO:0006164
Seca8g01901 364 CDD SAICAR_synt_Sc 101 363 - -
Seca8g01901 364 FunFam Phosphoribosylaminoimidazole-succinocarboxamide synthase 174 323 - -
Seca8g01901 364 PANTHER PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01901 Seca-Chr8 39379291 39385729 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01901 K01923 - gmx:100801209 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01901 8 39379291 39385729 Seca8g01901 8 39379291 39385729 ECH