Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01870 ATGGCCTCAATCTCAGGCATTTGCTCTTCCTCCCCAACTCTCAAGTACCAAAACCAAAACCAAAACCTTTCCCCTACTTTCACCAACCCAATACGACGTCGCACGCAACTCCCTTTATTCCCGACCCGACTTAAACTCCTCCCGACCCGCTCCGTCGCCCGTGAGGCTCCGGCGGACCTCTCCGCCGTCGCCAAGGGGACAAAGGAGGGGCTCGAGAAGGATCCTCGCGCACTGTGGCGGCGCTACGTGGACTGGCTCTACCAGCACAAGGAACTCGGGCTCTACCTCGACGTGAGTCGGGTCGGGTTCACAGATGAGTTCGTGCGCGAAATGGAGCCCCGATTCCAGGCCGCGTTTCGCGCCATGGAGGAGCTCGAGAAAGGTGCCATCGCGAACCCTGATGAAGGACGCATGGTTGGACATTACTGGCTGAGGGACTCGAATCGCGCTCCGAATTCGTTCCTCAAGACGCAGATTGACAACACACTCGATGCCATTTGTAGCTTCGCGAACGACGTCGTCTCCGGTAAGGTTATGAATGCGGTGATTTGGATTTGGCAGATTAAGCCTCCTTCGTCGCCGGAGGGTCGTTTTACTCAGATACTTTCCGTTGGGATTGGTGGTTCTGCTCTTGGACCACAGTTTGTTGCAGAAGCACTGGCTCCTGATAATCCTCCACTCAAGATAAGATTTATTGACAACACGGATCCTGCTGGCATTGATCATCAGATTGCACAACTTGGCCCTGAGTTAGCTTCAACGCTTGTAATAGTGATTTCAAAGAGTGGAGGTACTCCTGAGACTAGAAATGGCTTATTAGAAGTACAGAAGGCCTTTCGTGAAGCAGGATTGGATTTCCCAAAACAGGGTGTTGCTATAACACAAGAAAATTCTTTGTTGGATAATACCGCAAGAATTGAGGGCTGGTTAGCTAGATTTCCCATGTTTGACTGGGTGGGAGGTAGAACGTCAGAGATGTCTGCAGTTGGCCTGCTTCCAGCAGCTCTTCAGAGCATTGACATTAGAGAAATGCTTGCTGGTGCATCATTGATGGATGAGGCAAACAGGAGTACTGTGCTAAGGAATAATCCTGCAGCTTTGCTGGCTTTATGTTGGTATTGGGCTACAGATGGTGTAGGATCCAAGGATATGGTTATCCTTCCATACAAGGACAGCCTATTATTATTTAGTAGATACTTGCAACAGCTGGTCATGGAATCTCTTGGCAAGGAGTTTGACTTGGATGGTAATCGGGTTAATCAAGGAATTAGTGTCTATGGAAATAAAGGAAGCACAGATCAGCATGCCTACATTCAGCAACTGAGGGAAGGTGTACACAATTTCTTTGTGACATTCATTGAGGTGCTACGTGATAGGCCACCTGGTCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTATCTGTTTGGTATGCTACAGGGAACAAGGTCAGCTCTGTATGCTAATGACCGTGAATCCATCACAGTCACTGTGCAAGAAGTGACACCCAGATCAGTTGGAGCCCTTGTAGCACTTTATGAACGGGCAGTTGGGATATATGCCTCACTTGTCAACATTAATGCTTATCATCAACCTGGTGTGGAAGCTGGTAAGAAAGCAGCAGGAGAAGTATTAGCACTTCAGAAGCGGGTGTTGGCAGTGCTAAATGAGGCAAGCTGCAAGGAACCTGTTGAACCATTAACAGTTGAAGAAGTAGCTGAGCGTTGCCATGCTCCAGAAGATATTGAAGTAATTTACAAAATTATTGCTCATATGGCTGCCAACGACAGAGCACTAATTGCTGAAGGTAGCTGTGGTTCTCCACGAAGCATCAAGGTTTTTCTTGGGGAGTGTAATGTTGATGAACTGTACGCTTGA 1884 0.4846 MASISGICSSSPTLKYQNQNQNLSPTFTNPIRRRTQLPLFPTRLKLLPTRSVAREAPADLSAVAKGTKEGLEKDPRALWRRYVDWLYQHKELGLYLDVSRVGFTDEFVREMEPRFQAAFRAMEELEKGAIANPDEGRMVGHYWLRDSNRAPNSFLKTQIDNTLDAICSFANDVVSGKVMNAVIWIWQIKPPSSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLDFPKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQSIDIREMLAGASLMDEANRSTVLRNNPAALLALCWYWATDGVGSKDMVILPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGISVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDRESITVTVQEVTPRSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTVEEVAERCHAPEDIEVIYKIIAHMAANDRALIAEGSCGSPRSIKVFLGECNVDELYA. 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01870 627 Gene3D - 186 332 - -
Seca8g01870 627 FunFam Glucose-6-phosphate isomerase 338 530 - -
Seca8g01870 627 Gene3D - 65 185 - -
Seca8g01870 627 CDD SIS_PGI_1 160 336 IPR035476 -
Seca8g01870 627 Hamap Glucose-6-phosphate isomerase [pgi]. 91 550 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 37 556 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 CDD SIS_PGI_2 382 546 IPR035482 -
Seca8g01870 627 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 3 626 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 SUPERFAMILY SIS domain 78 550 IPR046348 GO:0097367|GO:1901135
Seca8g01870 627 Gene3D - 333 532 - -
Seca8g01870 627 Pfam Phosphoglucose isomerase 121 457 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 Pfam Phosphoglucose isomerase 488 548 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 PRINTS Glucose-6-phosphate isomerase signature 523 536 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 PRINTS Glucose-6-phosphate isomerase signature 491 509 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 PRINTS Glucose-6-phosphate isomerase signature 389 410 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 PRINTS Glucose-6-phosphate isomerase signature 313 331 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 PRINTS Glucose-6-phosphate isomerase signature 201 220 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 PRINTS Glucose-6-phosphate isomerase signature 509 523 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca8g01870 627 FunFam Glucose-6-phosphate isomerase 143 336 - -
Seca8g01870 627 ProSitePatterns Phosphoglucose isomerase signature 2. 523 540 IPR018189 GO:0004347|GO:0006094|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01870 Seca-Chr8 38577398 38584507 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01870 K01810 - gmx:100791285 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01870 8 38577398 38584507 Seca8g01870 8 38577398 38584507 ECH