Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01849 ATGGGTGTGAAGTTCACCACTATTTCCTTCATATTTTTCTGTGCTATAGCTATTTACCCATCCACCACAACCTGTGCCCACGATCCATGTGCTTCTCAACCCGACGACTCAGACCTCACCGTGATTCCCATATACGGAAAGTGCTCACCTTTCCAATCCGACCCAAACTCATGGCTCAACACGATCATCAACATGGCCTCCAATGACCCGGAGAGAATAGAGTACTTGTCCAGCCTCATGGTCCTAAGGAAAAGAAAGCCCGTCAACAAAGCCCCAATCGCTTCGGGCCAGGCCTTCAACATTGGCAGCTACGTTGTACGAGTCAGGCTCGGCACGCCGGGCCAACTCATGTTCATGGTCCTAGACACCAGCACCGACGAGGCCTGGGTCCCATGCACCGGCTGCGTCGGTTGCCCCAGCACCACCTCCTTCTCCCCACAAGCCTCCACCACTTACGGCGGCCCAGTTTCCTGCTCCGCCCCGCGCTGTGGCCAAGTCCGTGGCGCCTTCTCGTGCCCCGCTGGCCGCACCACCGCTTGCTACTTCAACCAATCCTACGCCGGCTCCTCCTTCTCCGCCACGCTCGTCCAAGACTCGCTCAGCTTGGCCGTCGACACCGTCCCGAACTACTCCTTCGGGTGCATCAACGCGGCCTCCGGGCCCATTCCGTCCCAAGGGCTTTTGGGTTTGGGCCGTGGGCCCTTGTCGTTGCTCTCGCAAACCGCGTCACTTTATAAAGGCGTGTTCTCCTACTGTCTCCCCAGTTTCAAGTCCTACTACTTTTCCGGGTCGCTCAAACTTGGGCCCGCGGGCCAACCCAGGCGGATACGAACCACCCCGCTTCTGCGAAACCCGCGCAGGCCCTCTTTGTATTACGTTAACCTCACTGGAGTCACCGTGGGGCGGGTCCACGTTGCTTTGCCAAGTCAGTTTTTGGCTTTTGACCCGAACACAGGATCCGGAACCATAATTGATTCGGGCACGGTGATAACCCGGTTCGTGGAACCAGTTTATAATGCAATCAGGGATGAGTTTAGAAGACAAGTGAAAGGTCCATTCACGAGCATAGGGGCATTTGACACGTGCTTTATGAAAACGTACGAGAATTTGGCACCGTTGATCAAGTTTCACTTCACGGGTTTGGATCTTACCTTGCCCTATGAGAACAGTCTCATCCATAGTAGTTACGGGTCTATGGCTTGTTTGGCCATGGCGGCAGCACCCAATAATGTGAACTCCGCGTTGAATGTCATTGCCAACTTGCAGCAGCAGAACCTTAGGATTTTGTTTGATACCGTTAATAATAAGGTTGGCATAGCCCGTGAGCTTTGTAACTAG 1338 0.5448 MGVKFTTISFIFFCAIAIYPSTTTCAHDPCASQPDDSDLTVIPIYGKCSPFQSDPNSWLNTIINMASNDPERIEYLSSLMVLRKRKPVNKAPIASGQAFNIGSYVVRVRLGTPGQLMFMVLDTSTDEAWVPCTGCVGCPSTTSFSPQASTTYGGPVSCSAPRCGQVRGAFSCPAGRTTACYFNQSYAGSSFSATLVQDSLSLAVDTVPNYSFGCINAASGPIPSQGLLGLGRGPLSLLSQTASLYKGVFSYCLPSFKSYYFSGSLKLGPAGQPRRIRTTPLLRNPRRPSLYYVNLTGVTVGRVHVALPSQFLAFDPNTGSGTIIDSGTVITRFVEPVYNAIRDEFRRQVKGPFTSIGAFDTCFMKTYENLAPLIKFHFTGLDLTLPYENSLIHSSYGSMACLAMAAAPNNVNSALNVIANLQQQNLRILFDTVNNKVGIARELCN. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01849 445 ProSiteProfiles Peptidase family A1 domain profile. 104 440 IPR033121 -
Seca8g01849 445 Pfam Xylanase inhibitor C-terminal 291 440 IPR032799 -
Seca8g01849 445 Pfam Xylanase inhibitor N-terminal 104 268 IPR032861 -
Seca8g01849 445 SUPERFAMILY Acid proteases 97 444 IPR021109 -
Seca8g01849 445 FunFam Aspartyl protease AED3 269 445 - -
Seca8g01849 445 FunFam aspartyl protease AED3 83 268 - -
Seca8g01849 445 Gene3D Acid Proteases 269 445 IPR021109 -
Seca8g01849 445 PANTHER ASPARTYL PROTEASES 30 438 IPR001461 GO:0004190|GO:0006508
Seca8g01849 445 Gene3D Acid Proteases 83 268 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01849 Seca-Chr8 38362402 38363739 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01849 94 445 Miscellaneous Gene Families AT1G77480 25.130 3.17e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01849 - - gmx:100809988 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01849 8 38362402 38363739 Seca8g01849 8 38362402 38363739 ECH