Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01845 ATGCGTGTTACAATCGATCTAGGGTTTCCGAGCCTGGTCCTCGTCGCGGTGGTTTGCGTCGTCGTACCGGCGATCGGCTTTGTGGTCCGCCTAAAGTGGCGGCGCGCTGCGGCGAGGGCGGAGGAGGTCAAGAGGCTCCTGGTTCTCGCGGCGGAGGAGTCTGCTAGGGCCGAGAGCGAGGCTTCATATCAGTACGGTGTCGTTTCGGTCGCCAAGAAGAATAACCAATGCGCTGTGTGCTACTGCCCCACCACTAGGCGTTGCGCGCAGTGCAAAGCGGTTCGCTACTGTTCTCGTAAGTGCCAAGTTGCTCATTGGTTTCAAGGTCACAAAGAAGAATGCCGTGCTCCCAGCACAACTCAACAGGCTGATGATCTGGTAAGTGATCTTGGCAAGAAGGTAGCAGAGCCAGACTACTGTGGTATCCATGATGAGAAATCTCAGTTTGAAAGCACAGAGTATACAACTATAACATCCTCTGAGAAACCCCCATTGTTTGATCTAAGCTATTCTCCCAAAATTTCGTGTGCAAAAGATGACAAAGTAAGAGTCGAGTCTCGTGCAGAGGGAAATATTACACACTCTAATTCTGAATTATCAAGTAACTCATTTTCTGGATTCTCAGCTTCCACTAGTGCTGGTGAATCATCTGATGATTCCTCCATTTGCGAGAGTATCACCTCAAATGAGCATGAGAGATCTGAGGGGCATACTTTTGCTGACCCCACCCATGACATTTCTGATACCACTTCAAATGGTAATTGCATGGGTGCAACCATGCCATTGTCACCTAAGTTTGCTAGTTTGGTTGACTCAGTAAATGGTTTTTCTACAATTCCTAAATTAAATCAAGTTAGGCATGGTTTTGGTAAAGAAGAGATTAAGCTCACATCAAATGGTAGTTCAGGTGTGATGATGCAGAAGGGGGTAACAATTGAGCCTTCTACAGTGTCTTCTGGATTCTGGAATAAAACTCTTGACTCGAGGGGGATAAAAGATGACTCTTATAGTGACCCTCTTCCATCCCACTCTAATGAATCTCTTCCAAAGTCTGTTGGGAACAATGTGCCAAGTGCAAGATCAGCATCTTTGGAGAATGAAGGTGTTGATTCTTCAGGTTGGGCAGATGCTTCGACCATCTATAACTTGCAAACTGTTGGCTCTAAAGGATCAAATCATGTTATGTTGAACGCTGGCAGCAACTTGAAGTCAGCTGAAATTAGATGTCCGCCACGTACATTTGCTGATACTAAGTTAGTTTATAGAACTGATGAGCATTCACATTACAGTACAAAATGTGGGAATAATGGCATCCAATCTGGCACTGCTACTTCATCTCAGATTGCTAGCTGTTCTCCAAATTCTAAGAATGGCCTGAAGACATCTGTTGCGAAAGTCGTTGATCAGTTTAGAGAATCAAATTTATCTAAACATGTTCCACTAGCTGTTGGGAGTGATATTGCTGGAAAATACAGTGACAAGTTGGTGCAGGGTCTCTTTCCATATGATTTATTTGTCAAGCTTTATAACTGGAATAGAGTGGAGTTTCAACCATTTGGTCTTATAAATTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCATTTACACCACCCCTGACTGCTTATTTGCTTCAAGGACTTCATTCAAAATCATGTGCAAATAAAAAATGGTGCTTCATCTGTGAGTTTGAAGGTTTGCTTTTGAAGGCAAAAGACACAAAATCTCCCCTCTCGCCTATGGGCATAATCTCTCAACTTAAGAATATTGGGAGCCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTAAGGCATGCGGTTGAGACAATGCAATCTGTTTGCCTTATGGAATCTGGATTTAACACAGCAGACTCATTAAAAGAGGAAACTAATATAATGGGTCTAACATTTGGAGGCTATCTTCGATCAAAGATAAAATGCATGAAATGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTCGAGATAGAAGGGGAGATAGCAACCCTGGAGGAGGCCCTTCGACAGTTTACAAGCACTGAGACTCTGGATGGAGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATCAGAAGGCCAAGAAGAAAATGACAGTTTCAGAGGCACCTAATGTTCTTACAATTGCATTGAAGAGATTTAAGTTTGGAAAATATGGGAAGCTCAATAAGCCTATTCGATTTCCTGAAATACTTAACTTGGCACCTTTCATAAGCGAGACTAGTGATTTGGCTATATACCGACTGTATGGGGTAGTTGTTCACTTGGATATCATGAATGCTGCTTTTTCAGGTCACTATGTGTGCTATGTGAAGAATTTCCAAAACAGGTGGTTTAAGGTTGATGATAGTGTGGTGACGGCTGTTGATTTGGAAACAGTCTTGACAAAAGGAGCATACATGCTTCTTTATGCAAGGTGCTCACCTAGGGCCCCAAGATCAATCAGGAACATGATAGTATCCTCAGATTCAAAAAGCAAAGTCAATGGAAAAGCTGTTACAATGAAATCAAGATATGTATCTTCAGATTCTGTTGTTGCGGAGAGCATGACTAGTTCGATTTCTTCAGATGGTTCAGCTGCCTTAGAGACTATGTATGCGAAGTTTCAGCACATGAAAATGATTTTGGAAGAAGACTCATCAAGTGATAATTCATCCCTTATCAGCAGCAATTCTGATGAAGGTTCTTGCAGTACTGATAGCACCTGTGATTCAACCAGTACTGATGACTTTGCTGATCACATTTTTGGTAATTCGGTGTTGAGGAATTCTGATGCTTGCTCCACATTGTCATCTCCTCCCTTGAATACTAGACATTTGCCCCCATCTGATATGGAGCCATATGATTCAGTTTTCCCACATGCAAGTGGATTGCGACCACCTCCCACAGGTCCAAGGGTGGAGATAGATGGTCTTTTGTACAGGAGCAGACCGCTGGATGTTAAAAGGAGTGGGGGAGGTGTTTCTCATTTGCATGGTGACACAACTATAGAGCATAGGAAGTTAGATACAAGTAGGAGTAGCAGTAGTATACAAGGATCCAACCATATTAATGATATAAATTCTGGTGTATCATATAGAAAGTCAAAGGAAAGAACGGATTGA 3153 0.4269 MRVTIDLGFPSLVLVAVVCVVVPAIGFVVRLKWRRAAARAEEVKRLLVLAAEESARAESEASYQYGVVSVAKKNNQCAVCYCPTTRRCAQCKAVRYCSRKCQVAHWFQGHKEECRAPSTTQQADDLVSDLGKKVAEPDYCGIHDEKSQFESTEYTTITSSEKPPLFDLSYSPKISCAKDDKVRVESRAEGNITHSNSELSSNSFSGFSASTSAGESSDDSSICESITSNEHERSEGHTFADPTHDISDTTSNGNCMGATMPLSPKFASLVDSVNGFSTIPKLNQVRHGFGKEEIKLTSNGSSGVMMQKGVTIEPSTVSSGFWNKTLDSRGIKDDSYSDPLPSHSNESLPKSVGNNVPSARSASLENEGVDSSGWADASTIYNLQTVGSKGSNHVMLNAGSNLKSAEIRCPPRTFADTKLVYRTDEHSHYSTKCGNNGIQSGTATSSQIASCSPNSKNGLKTSVAKVVDQFRESNLSKHVPLAVGSDIAGKYSDKLVQGLFPYDLFVKLYNWNRVEFQPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFICEFEGLLLKAKDTKSPLSPMGIISQLKNIGSQLGNGREEDAHEFLRHAVETMQSVCLMESGFNTADSLKEETNIMGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGEIATLEEALRQFTSTETLDGENKYHCVRCKSYQKAKKKMTVSEAPNVLTIALKRFKFGKYGKLNKPIRFPEILNLAPFISETSDLAIYRLYGVVVHLDIMNAAFSGHYVCYVKNFQNRWFKVDDSVVTAVDLETVLTKGAYMLLYARCSPRAPRSIRNMIVSSDSKSKVNGKAVTMKSRYVSSDSVVAESMTSSISSDGSAALETMYAKFQHMKMILEEDSSSDNSSLISSNSDEGSCSTDSTCDSTSTDDFADHIFGNSVLRNSDACSTLSSPPLNTRHLPPSDMEPYDSVFPHASGLRPPPTGPRVEIDGLLYRSRPLDVKRSGGGVSHLHGDTTIEHRKLDTSRSSSSIQGSNHINDINSGVSYRKSKERTD. 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01845 1050 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 519 823 IPR028889 -
Seca8g01845 1050 FunFam Ubiquitin carboxyl-terminal hydrolase 15 68 118 - -
Seca8g01845 1050 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Seca8g01845 1050 FunFam Ubiquitin carboxyl-terminal hydrolase 15 513 831 - -
Seca8g01845 1050 Coils Coil 40 60 - -
Seca8g01845 1050 Pfam Ubiquitin carboxyl-terminal hydrolase 519 820 IPR001394 GO:0004843|GO:0016579
Seca8g01845 1050 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 174 826 - -
Seca8g01845 1050 MobiDBLite consensus disorder prediction 188 256 - -
Seca8g01845 1050 Pfam MYND finger 77 114 IPR002893 -
Seca8g01845 1050 SUPERFAMILY HIT/MYND zinc finger-like 70 116 - -
Seca8g01845 1050 Gene3D Cysteine proteinases 512 833 - -
Seca8g01845 1050 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Seca8g01845 1050 MobiDBLite consensus disorder prediction 338 372 - -
Seca8g01845 1050 MobiDBLite consensus disorder prediction 225 242 - -
Seca8g01845 1050 MobiDBLite consensus disorder prediction 332 372 - -
Seca8g01845 1050 SUPERFAMILY Cysteine proteinases 515 825 IPR038765 -
Seca8g01845 1050 Gene3D - 66 116 - -
Seca8g01845 1050 MobiDBLite consensus disorder prediction 1022 1040 - -
Seca8g01845 1050 MobiDBLite consensus disorder prediction 189 224 - -
Seca8g01845 1050 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 520 535 IPR018200 GO:0004843|GO:0006511
Seca8g01845 1050 MobiDBLite consensus disorder prediction 896 920 - -
Seca8g01845 1050 MobiDBLite consensus disorder prediction 999 1050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01845 Seca-Chr8 38258245 38267067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01845 422 875 Miscellaneous Gene Families AT4G31670 43.355 3.59e-123 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01845 K11855 - gmx:100782303 1367.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01845 8 38258245 38267067 Seca8g01845 8 38258245 38267067 ECH