Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01798 ATGGATTGGGAAGATCTCCGTACAATCTTAACGAAATCAATCACCGTCCTTGCCTGGCCTCCGTTTAGTTTGCTCTGTCCCTTGTACGTTTCTATTCGGGCAATGGAGACTGATTCCCGCTCCAGCAATAAGCGATGCCTTGCTTTCTGGGTTTTGTTTTCCTTATCTATGATCATGGAATGGGAGCTTGCAGTGTTACTTAAGTGGCTCCCATGGTGGCCTCATGTGAAAGCCATTGCAACTATCTTGCTGTTAATACCTTATTTTGGTGCTGTGCCATTCGCATATAAGTTCTTCATTAAACACTACTGTACCTGGAACATATATACAAAAACATTCAACATCTTCAGTCAGAAGAGCACACATTTTGAATCAGATGAGCATAGCAAAACTCTTTTCCAAGATCAGGATAGCACACTTGTTGAGGTCTTTGGCCAGACAATTATTACAAGTCAAATACAAGAGGAAGAACTTGTAGTATATCAGGGGAGAGATGATCTTGCTGGTTCTGACAAGACAGAAAGCAGTTATACAAGGCTAACTGGTAAAAATCAAGTCCAGAAGGAATGGAGCTGTGCTTTATGTCAGATTACTACCACCAGTGAAAATTGCTTAGGGGCACATCTTCAAGGGAATAAACACAAGGCTAAGGAAGAAGAACTTAGACTTGAGTTACCTGTAACAAATAGCACATACCTGTTATCCTCTGCACAGAAAAAAATCAAAGGAATGATTCTACTGAAGAATCTCAACCAAATTGCAAACATTCTAAGTCCTGTTTCCAGATCCGTAAGATGGTGTGAATGGACAAAACCAGAGTCTGGATGGACAAAATTAAATACTGATGGCTCTATACATAGAGAAACTGCTGGTTTTGGTGGGCTGCTTCGCGATTACAGGGGTGAACCAATATGTGCTTTTGTCTCTAAAGCTCCTCAAGGAGATGTTTTCTTGGTTGAGCTGTGGGCCATATGGAGAGGCCTTGTTCTTTCCTTGGGTCTTGGGATTAAATCAATATGGGTGGAGTCAGACTCCATGAGTGTTGTGAAGACAATCAATAAAAAACAGCCTTCTTGTCCAAAAGCTGATAGCTCTTTGAAACAAATATGGAAACTCTTAAATAAGTTTGATAAATATAAGATTTCTCACTCATGGCGTGAAACTAATAGAGCAGCAGATCATCTTGCAAAGATGGTTATTCCGGGAAATGATGTGGTTTTGTGGCCAGTTGATTTTCCACACAGCCTTTGCAATATCATTAAAGATGATGCCAGAGGAAAGAAGTATCTTAGACGGTGA 1299 0.4057 MDWEDLRTILTKSITVLAWPPFSLLCPLYVSIRAMETDSRSSNKRCLAFWVLFSLSMIMEWELAVLLKWLPWWPHVKAIATILLLIPYFGAVPFAYKFFIKHYCTWNIYTKTFNIFSQKSTHFESDEHSKTLFQDQDSTLVEVFGQTIITSQIQEEELVVYQGRDDLAGSDKTESSYTRLTGKNQVQKEWSCALCQITTTSENCLGAHLQGNKHKAKEEELRLELPVTNSTYLLSSAQKKIKGMILLKNLNQIANILSPVSRSVRWCEWTKPESGWTKLNTDGSIHRETAGFGGLLRDYRGEPICAFVSKAPQGDVFLVELWAIWRGLVLSLGLGIKSIWVESDSMSVVKTINKKQPSCPKADSSLKQIWKLLNKFDKYKISHSWRETNRAADHLAKMVIPGNDVVLWPVDFPHSLCNIIKDDARGKKYLRR. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01798 432 Pfam Reverse transcriptase-like 280 398 IPR002156 GO:0003676|GO:0004523
Seca8g01798 432 Gene3D - 276 400 IPR036397 GO:0003676
Seca8g01798 432 PANTHER OS05G0353850 PROTEIN 255 424 - -
Seca8g01798 432 SUPERFAMILY Ribonuclease H-like 276 406 IPR012337 -
Seca8g01798 432 Pfam Zinc-finger of C2H2 type 190 214 - -
Seca8g01798 432 SUPERFAMILY beta-beta-alpha zinc fingers 183 223 IPR036236 -
Seca8g01798 432 CDD RNase_H_like 279 397 IPR044730 -
Seca8g01798 432 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Seca8g01798 432 Gene3D Classic Zinc Finger 180 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01798 Seca-Chr8 36012912 36017281 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01798 - - gmx:100787629 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01798 8 36012912 36017281 Seca8g01798 8 36012912 36017281 ECH