LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g01795	ATGGCGACGTTCGAACTTTACCGTAGGTCGACGATCGGAATGTGCCTCACCGAGACTTTGGATGAGATGGTTCAGAATGGAACTCTTAGCCCTGAGCTTGCGATTCAGGTTCTCGTCCAGTTCGATAAGTCTATGACTGAGGCTCTGGAAACGCAAGTTAAGAGCAAGGTCTCCATCAAGGGACATCTCCATACATACAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTCAAGAATGAGGACAGCCAGGAGAATGTTGGACGGGTTAAAATAGTGGCGTGTGACTCGAAGTTGCTCTCACAATAA	321	0.4611	MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLSQ.	107

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g01795	106	SUPERFAMILY	Transcription factor IIA (TFIIA), beta-barrel domain	52	102	IPR009088	GO:0005672\|GO:0006367
	Seca8g01795	106	Gene3D	-	3	54	IPR009083	GO:0005672\|GO:0006367
	Seca8g01795	106	CDD	TFIIA_gamma_C	57	102	IPR015871	GO:0005672\|GO:0006367
	Seca8g01795	106	CDD	TFIIA_gamma_N	4	51	IPR015872	GO:0005672\|GO:0006367
	Seca8g01795	106	Pfam	Transcription initiation factor IIA, gamma subunit, helical domain	4	49	IPR015872	GO:0005672\|GO:0006367
	Seca8g01795	106	Gene3D	-	55	105	IPR009088	GO:0005672\|GO:0006367
	Seca8g01795	106	PANTHER	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	1	106	IPR003194	GO:0005672\|GO:0006367
	Seca8g01795	106	Pfam	Transcription initiation factor IIA, gamma subunit	60	101	IPR015871	GO:0005672\|GO:0006367
	Seca8g01795	106	PIRSF	TFIIA_gamma_hum	1	106	IPR003194	GO:0005672\|GO:0006367
	Seca8g01795	106	FunFam	Transcription initiation factor IIA subunit 2	55	106	-	-
	Seca8g01795	106	FunFam	Transcription initiation factor IIA subunit 2	2	54	-	-
	Seca8g01795	106	SUPERFAMILY	Transcription factor IIA (TFIIA), alpha-helical domain	4	54	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g01795	Seca-Chr8	35891250	35895670	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g01795	K03123		-	fve:101306952	212.616

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca8g01795	8	35891250	35895670	Seca8g01795	8	35891250	35895670	ECH