Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01762 ATGGCTGTTTCAACCAGTTTCTCTGGTGCAAAGTTGGAGGCTTTATTGCTGAAATGTTGTTCCTCTTCATCATCAACATGTTCCCTTAGGCCCTCTTCCAATGCTACCACAACCCATTTATCATTTTCTGGCAAAAACAGAAGGACCCTCATTCAGAGTCAGAGAGGGACAATTCGCTGTGAAGCTTCTGGTTCTGAGGTTTTGGTTGATCCCAGTAATAATGCTAAAAGTGTCTCTGCTCTTGAACAGCTTAAGACTTCTGCAGCTGACAGGTATACAAAGGAAAGGAGCAGCATTGTGGTTATTGGGCTTAGTGTGCATACTACACCTGTGGAAATGCGTGAAAAACTTGCCATACCAGAAGCAGAATGGCCTAGGGCCATTGGGGAGCTTTGTGGTCTGAATCATATTGAAGAAGCAGCTGTTCTTAGCACCTGCAACCGAATGGAGATTTATGTTGTAGCTCTCTCCCAGCACCGTGGTGTCAAAGAAGTCACAGAATGGATGTCAAAAACAAGTGGAATTCCTGTGGCAGAGCTTTGCAAGCATCGTTTTTTGCTTTACAACAAAGATGCCACACAGCACATTTTTGAGGTATCAGCAGGTCTTGACTCTCTTGTAATGGGAGAAGGTCAAATTCTTGCACAGGTCAAGCAAGTTGTGAAAGTTGGACAAGGAGTTAATGGCTTTGGGAGAAACATTAGTGGGCTATTCAAGCATGCAATCACTGTTGGTAAGAGGGTTAGAACTGAGACAAACATTGCTGCTGGTGCAGTTTCTGTGAGCTCAGCTGCTGTTGAATTAGCCTTAATGAAGCTACCTGAAGCCTCACATGGTAATGCAAGGATGTTGGTTATTGGAGCTGGGAAAATGGGAAAGCTTGTGATCAAGCATTTGGTAGCAAAAGGTTGTAAGAAAATGGTTGTTGTCAATAGAACTGAGGAGAGAGTTGCAGCAATCCGTGAAGAAATAAATGGTGTTGAGATAATCTATAAACCACTTTCAGAAATGCTCACTTGTGTTGGTGAAGCTGATGTGGTTTTCACAAGCACAGCATCAGAAAACCCTTTGTTCTTGAAAGATGATGTTAAGGACCTTCCTTTAGCAAGTGAGCAAGTTGGGGGTCATCGCCTATTCATTGATATATCTGTTCCTAGGAATGTTGGTTCATGTATCTCAGAACTTGAGTCTGTGAGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTGGCTGCTAACAAAGAGGATAGGCTAAGAAAAGCTATGGAAGCTCAAGTAATCATTGCTGAAGAATCAAAGCAATTTGAAGCTTGGAGGGACTCATTGGAAACTGTTCCAACTATTAAAAAATTGAGGGCTTATGCTGAGAGAATCAGGCTTGCTGAGCTTGAGAAATGCTTAGGTAAGATGGGTGATGATATCACAAAGAAGACACAAAGAGCTGTGGATGATCTTAGTAGAGGGATAGTGAATAAGCTGCTTCATGGTCCAATGCAACACTTGAGGTGTGATGGTAGTGATAGCAGGACTCTAAGTGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAGCCTTGAGACTGAAATATCTGTTTTGGAACAGAAGATTAGAGCCAAGGTGGAGCAAAAACCATAG 1641 0.4241 MAVSTSFSGAKLEALLLKCCSSSSSTCSLRPSSNATTTHLSFSGKNRRTLIQSQRGTIRCEASGSEVLVDPSNNAKSVSALEQLKTSAADRYTKERSSIVVIGLSVHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCKHRFLLYNKDATQHIFEVSAGLDSLVMGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHGNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEERVAAIREEINGVEIIYKPLSEMLTCVGEADVVFTSTASENPLFLKDDVKDLPLASEQVGGHRLFIDISVPRNVGSCISELESVRVYNVDDLKEVVAANKEDRLRKAMEAQVIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEKCLGKMGDDITKKTQRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEISVLEQKIRAKVEQKP. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01762 546 FunFam Glutamyl-tRNA reductase 98 257 - -
Seca8g01762 546 NCBIfam glutamyl-tRNA reductase 99 507 IPR000343 GO:0008883|GO:0033014|GO:0050661
Seca8g01762 546 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 102 252 IPR015895 GO:0008883|GO:0033014|GO:0050661
Seca8g01762 546 Pfam Shikimate / quinate 5-dehydrogenase 268 409 IPR006151 -
Seca8g01762 546 Gene3D - 258 410 - -
Seca8g01762 546 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 544 - -
Seca8g01762 546 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 98 254 IPR036343 GO:0008883|GO:0033014|GO:0050661
Seca8g01762 546 FunFam Glutamyl-tRNA reductase 257 416 - -
Seca8g01762 546 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 257 417 IPR036291 -
Seca8g01762 546 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 421 507 IPR036453 GO:0008883|GO:0033014|GO:0050661
Seca8g01762 546 CDD NAD_bind_Glutamyl_tRNA_reduct 99 421 - -
Seca8g01762 546 Hamap Glutamyl-tRNA reductase [hemA]. 98 525 IPR000343 GO:0008883|GO:0033014|GO:0050661
Seca8g01762 546 ProSitePatterns Glutamyl-tRNA reductase signature. 195 218 IPR018214 GO:0008883
Seca8g01762 546 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 423 527 IPR015896 GO:0008883|GO:0033014|GO:0050661
Seca8g01762 546 Gene3D - 97 257 IPR036343 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01762 Seca-Chr8 35141244 35144756 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01762 K02492 - gmx:100815985 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01762 8 35141244 35144756 Seca8g01762 8 35141244 35144756 ECH