Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01263 ATGGAACAACTGAAGCCAAGTCCTGCAAACTCTTCCCCTCTCACCCCACTTGGTTTCTTGGACAGAGCAGCCACCGTTTACGGCGACACTCCTTCCGTCGTTTACAATGACACCACCTACACCTGGTCCCAAACTCGCCGCCGGTGTCTCCAGCTTGCCTCTGCTCTCTCCTCCCTCGGAATCCGCCGCGGCCACGTCGTCTCTGTCGTCGCACCCAACATCCCCGCCATGTACGAGCTCCAATTCGCCGTCCCCTTCGCCGGCGCAATCCTCAACAACATCAACACCCGCCTCGACGCACGCACCATCTCCGTCATCCTCCGTCACGCCGAGTCCAAGCTCGTCTTCGTGGACTGCGCCTCACGCGATCTCGTCCTCGAAGCCTTGTCCCTCTTCCCTTCACAACAACGCCCACTCCTCGTCCTCATCACGGACGATACAGTTGAGACTTCTACCACCACCGTTGATTTCATCAACACGTATGAGGGTCTACTGATGAAGGGTGATCCAGACTTCAAGTGGGTCCAGCCCAACAGCGAGTGGGACCCGATGTTATTAAACTACACTTCAGGAACGACGTCGTCTCCAAAAGGCGTTGTTCACTGCCACAGAGGAGCCTTCATCATCACCGTTGACACGCTGATTGATTGGGCGGTTCCAAAGCAACCAGTATATTTATGGACTCTCCCTATCTTCCACGTTAACGGGTGGGGCTTCCCGTGGGGGATCGCAGCCGTTGGTGGAACTAACATCTGCGTGCGCAAATTCGACGCGGGAATAGTGTACACTCTCATCAACAAACACAACGTGACTCACATGTGTGGCGCACCTGTGGTGCTCAACATGCTAACTAACTCTCCCAACAACAAACCGTTAGAGAAACCGGTTCAGATTCTCACCGCTGCAGCACCACCTCCAGCCGCGATTCTGTTGCGGATAGAGTCGTTAGGCTTCGCTGTGAGCCACGGGTACGGGCTGACGGAGTCAGGCGGGGTGGTGGTGACTTGCGCGTGGAAGGGGAAGTGGAATTACCTTCCGGCGAAGGAGAGGGCGCGGTTGAAGGCGCGGCAAGGAGTGAGAACGATTGGGACGACGGAGGTGGACGTGGTGGGTCCCACAGGGAAGAGTGTGAAGCGTGACGGTATAACACTAGGGGAGGTTGTTATGAGAGGCGGGTCAATTATGTTAGGTTACCTGAAGGACCCAGAGGGAACCGCGAGTTGTTTTAAGAACGCGTGGTTTTACACAGGCGATGTGGGAGTTATGCATGAGGATGGGTATTTGGAGATTAAGGACAGGTCAAAGGACGTCATTATTAGCGGCGGTGAGAATCTCAGCAGCGTCGAGGTGGAGTCCGTGCTGTATGGACACCCGGCGGTGAATGAGGCGGCGGTTGTGGCCAGAGCGGATGAGTTCTGGGGGGAAACGCCGTGTGCGTTTGTGAGCTTAAAAGAAGGGTTGAAAGAGAAACCGACGGTGAAGGAAATAGTTGAGTTTTGTAGGGAGAACATGCCGCATTTTATGGTTCCCAAAACGGTGGTTTTCAAGGATGAGCTTCCAAAAACATCGACGGGGAAGATTCAGAAGTTTGTACTCAGACAGATTGCAAAGGACATGGGACCAGTCACAAAGAGTAGAATGTGA 1644 0.5444 MEQLKPSPANSSPLTPLGFLDRAATVYGDTPSVVYNDTTYTWSQTRRRCLQLASALSSLGIRRGHVVSVVAPNIPAMYELQFAVPFAGAILNNINTRLDARTISVILRHAESKLVFVDCASRDLVLEALSLFPSQQRPLLVLITDDTVETSTTTVDFINTYEGLLMKGDPDFKWVQPNSEWDPMLLNYTSGTTSSPKGVVHCHRGAFIITVDTLIDWAVPKQPVYLWTLPIFHVNGWGFPWGIAAVGGTNICVRKFDAGIVYTLINKHNVTHMCGAPVVLNMLTNSPNNKPLEKPVQILTAAAPPPAAILLRIESLGFAVSHGYGLTESGGVVVTCAWKGKWNYLPAKERARLKARQGVRTIGTTEVDVVGPTGKSVKRDGITLGEVVMRGGSIMLGYLKDPEGTASCFKNAWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESVLYGHPAVNEAAVVARADEFWGETPCAFVSLKEGLKEKPTVKEIVEFCRENMPHFMVPKTVVFKDELPKTSTGKIQKFVLRQIAKDMGPVTKSRM. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01263 547 CDD ttLC_FACS_AEE21_like 12 533 - -
Seca8g01263 547 Gene3D - 3 435 IPR042099 -
Seca8g01263 547 PANTHER ACYL-ACTIVATING ENZYME 1 542 - -
Seca8g01263 547 Pfam AMP-binding enzyme C-terminal domain 449 526 IPR025110 -
Seca8g01263 547 SUPERFAMILY Acetyl-CoA synthetase-like 11 538 - -
Seca8g01263 547 FunFam 2,3-dihydroxybenzoate-AMP ligase 435 540 - -
Seca8g01263 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 1 435 - -
Seca8g01263 547 Gene3D - 436 545 IPR045851 -
Seca8g01263 547 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Seca8g01263 547 Pfam AMP-binding enzyme 21 440 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01263 Seca-Chr8 19551059 19552702 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01263 1 539 EF-hand Containing Proteins AT1G21540 63.949 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01263 - - gmx:100779857 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01263 8 19551059 19552702 Seca8g01263 8 19551059 19552702 ECH