Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01258 ATGGAACAACTGAAGCCAAGCCCTGCAAACTCTTCCCCTCTCACCCCACTTGGTTTCTTGGACAGAGCAGCCACCGTTTACGGCGACACCCCTTCCGTCGTTTACGATGACACCACCTACACCTGGTCCCAAACCCGCCGCCGTTGCCTCCAGCTTGCCTCCGCCCTCTCCTCCCTCGGAATCCGCCGCGGCCACGTCGTCTCCGTCGTCGCACCCAACATCCCCTCCATGTACGAGCTCCAATTCGCCGTCCCCTTCGCCGGCGCAATCCTCAACAACATCAACACCCGCCTCGATGCACGCACTATCTCCGTCATCCTCCGTCACGCCGAGTCCAAGCTCGTCTTCGTGGACTGCGCCTTACGCGATCTCGTCCTCGAAGCCCTGTCCCTCTTCCCTCCACAACAACGCCCACTCCTCGTCCTCATCATGGACGATACAGTTGAGACTTCTACCACCACCGTTGATTTCATCGACACGTATGAGGGTCTATTGATGAAGGGTGATCCAGATTTCAAGTGGGTCCAGCCCAACAACGAGTGGGACCCGATGTTACTAAACTACACTTCAGGAACGACGTCGTCTCCAAAAGGCGTTGTTCATTGCCATAGAGGAGCCTTCATCATCACCGTTGATACGCTGATTGATTGGGCGGTTCCGAAACAACCAATTTATCTATGGACTCTCCCTATCTTCCACGCTAACGGGTGGAGCTTCCCGTGGGGGATCGCAGCCGTTGGTGGAACCAACATCTGCGTCCGCAAGTTCGATGCAGGAATTGTGTACGGTCTGATCAAGCGCCACGGTGTCACTCACATGTGCGGTGCGCCTGTGGTACTCAACATGCTAACTAACTCTCCCGACAGCAAACCGCTCGAGAGAACAGTTCAGATTCTCACCGCCGGGGCGCCGCCGCCTGCTGCTGTTCTGTTCAGGACGGAGTCGCTGGGGTTCGCGGTGAGCCACGGGTACGGGCTGACGGAGACAGGCGGGCTGGTGGTGACGTGCGCGTGGAAGGGGAAGTGGAATTACCTTCCGGCGACGGAGAGGGCGCGGCTGAAGGCGCGGCAGGGTGTGAGGACGATTGGGTTGACAGAGGTGGATGTGGTGGGTCCCACAGGGGAGAGCGTGAAGCGTGATGGGGTAACACTCGGGGAGGTTGTTATGAGAGGAGGGTGCGTTATGTTAGGGTACCTAAAGGACCCAGAGGGAACCGCGAGTTGTTTTAAGAACGCGTGGTTTTACACAGGCGATGTGGGAGTTATGCATGAGGATGGGTATTTGGAGATTAAGGACAGGTCAAAGGACGTCATTATTAGCGGCGGTGAGAATCTCAGCAGCGTCGAGGTGGAGTCCGTGCTGTATGGACACCCGGCGGTGAACGAGGCGGCGGTTGTGGCCAGGGCTGATGAGTTCTGGGGGGAGACGCCGTGTGCGTTTGTGAGCTTGAAGGAAGGGTTGAAGGAGAAACCGACGGAGAAGGAGATAGTTGAGTATTGTAGGGAGAATATGCCGCGTTATATGGTTCCAAAAACGGTGGTTTTTAAAGATGAGCTTCCTAAGACATCGACGGGGAAGATTCAGAAGTTTGTGCTTAGACAGATTGCCAAGGACATGGGACCAGTCGCAAAGAGTCGAATGTGA 1644 0.5627 MEQLKPSPANSSPLTPLGFLDRAATVYGDTPSVVYDDTTYTWSQTRRRCLQLASALSSLGIRRGHVVSVVAPNIPSMYELQFAVPFAGAILNNINTRLDARTISVILRHAESKLVFVDCALRDLVLEALSLFPPQQRPLLVLIMDDTVETSTTTVDFIDTYEGLLMKGDPDFKWVQPNNEWDPMLLNYTSGTTSSPKGVVHCHRGAFIITVDTLIDWAVPKQPIYLWTLPIFHANGWSFPWGIAAVGGTNICVRKFDAGIVYGLIKRHGVTHMCGAPVVLNMLTNSPDSKPLERTVQILTAGAPPPAAVLFRTESLGFAVSHGYGLTETGGLVVTCAWKGKWNYLPATERARLKARQGVRTIGLTEVDVVGPTGESVKRDGVTLGEVVMRGGCVMLGYLKDPEGTASCFKNAWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESVLYGHPAVNEAAVVARADEFWGETPCAFVSLKEGLKEKPTEKEIVEYCRENMPRYMVPKTVVFKDELPKTSTGKIQKFVLRQIAKDMGPVAKSRM. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01258 547 CDD ttLC_FACS_AEE21_like 12 533 - -
Seca8g01258 547 FunFam 2,3-dihydroxybenzoate-AMP ligase 435 540 - -
Seca8g01258 547 Gene3D - 3 435 IPR042099 -
Seca8g01258 547 Pfam AMP-binding enzyme 21 440 IPR000873 -
Seca8g01258 547 PANTHER ACYL-ACTIVATING ENZYME 1 542 - -
Seca8g01258 547 SUPERFAMILY Acetyl-CoA synthetase-like 11 538 - -
Seca8g01258 547 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Seca8g01258 547 Gene3D - 436 545 IPR045851 -
Seca8g01258 547 Pfam AMP-binding enzyme C-terminal domain 449 526 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01258 Seca-Chr8 19455971 19457614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01258 1 539 EF-hand Containing Proteins AT1G21540 63.949 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01258 - - gmx:100779857 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01258 8 19455971 19457614 Seca8g01258 8 19455971 19457614 ECH