Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01110 ATGGACGACGAGGTGCGCAAGATCTTCAACAAATTCGACAAGAACGGCGACGGAAAAATCTCGTCGTCGGAGCTGAAGGAGATGCTCCACACGCTCGGCTCGAAAACAACCTCCGAGGAGGTTAGGCGCATGATGGAGGAGATTGACCAGAACGGCGACGGATACATCGACCTCAAGGAGTTCGCCGACTTCCACTGCAACGACGACGGCAAAGACGATTCCAAGGAGCTACGCGACGCCTTTGATCTCTACGACCTCGACAAGAACGGCCTCATCTCCGCTAACGAATTGCATGCCGTACTCAAAAAGCTCGGTGAAAAGTGCTCCCTCGGCGACTGCCGGAGGATGATCAGCAACGTCGACGTCGACGGCGACGGCAACGTAAATTTCGAGGAGTTCAAGAAGATGATGGCTCGCTCTTAG 423 0.5461 MDDEVRKIFNKFDKNGDGKISSSELKEMLHTLGSKTTSEEVRRMMEEIDQNGDGYIDLKEFADFHCNDDGKDDSKELRDAFDLYDLDKNGLISANELHAVLKKLGEKCSLGDCRRMISNVDVDGDGNVNFEEFKKMMARS. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01110 140 FunFam Probable calcium-binding protein CML27 1 69 - -
Seca8g01110 140 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Seca8g01110 140 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Seca8g01110 140 CDD EFh 76 138 IPR002048 GO:0005509
Seca8g01110 140 Gene3D - 67 140 - -
Seca8g01110 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 76 138 - -
Seca8g01110 140 SUPERFAMILY EF-hand 3 138 IPR011992 -
Seca8g01110 140 SMART efh_1 112 140 IPR002048 GO:0005509
Seca8g01110 140 SMART efh_1 40 68 IPR002048 GO:0005509
Seca8g01110 140 SMART efh_1 4 32 IPR002048 GO:0005509
Seca8g01110 140 SMART efh_1 76 104 IPR002048 GO:0005509
Seca8g01110 140 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Seca8g01110 140 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Seca8g01110 140 CDD EFh 4 65 IPR002048 GO:0005509
Seca8g01110 140 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Seca8g01110 140 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
Seca8g01110 140 Gene3D - 1 66 - -
Seca8g01110 140 FunFam Probable calcium-binding protein CML27 70 140 - -
Seca8g01110 140 ProSiteProfiles EF-hand calcium-binding domain profile. 108 140 IPR002048 GO:0005509
Seca8g01110 140 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Seca8g01110 140 Pfam EF-hand domain pair 76 137 IPR002048 GO:0005509
Seca8g01110 140 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01110 Seca-Chr8 16084393 16084815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01110 3 137 EF-hand Containing Proteins AT1G66400 56.522 6.17e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01110 K13448 - gmx:100796491 241.121