Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01044 ATGGCGTCTTCTGAGTCTTGTTCTCCCACTGTTCCTCTCCTTCTCCCTTCACTTTTCTTCATCATTCTCCTTCAATTTCAAACAAGTGTTTCCCCTGTCTCTTCACCACAAACACAAAGTTTCCTCATTTTGCCACTAAAAACACAAACACTCCCTCAACCTCAAGCACCTTCTTCACGTAAGCTCAATTTCCAACACAATGTGACCTTAACAGTCTCACTAACCATTGGCTCACCCCCACAGAACGTTACCATGGTCCTCGACACAGGGAGTGAACTCTCATGGCTTCACTGCAAAAAGCTCCCAAATTTAAACTCTATTTTCAACCCACTCATCTCTTCCTCCTACACCCCAACACCTTGCACCTCACCCATTTGCACGACCCAAACCCGAGACTTTTCAATACCCGTTTCCTGTGACCCGAAAAAACTCTGCCACGTCATCGTCTCATACGCCGACGCGTCTTCCATGGAGGGAAACCTGGCAACAGAGACGTTCTTTATCGGAGGCTCCGCACAACCCGGGACGGTATTCGGGTGCATGGATTCCGGGTACAGCTCTGACTCCGATGAGGATTCAAAGACAACCGGGTTAATGGGTATGAACCGTGGGTCGCTGTCTTTTGTGACACAAATGGGGCTCCCGAAATTCTCGTACTGCATCTCCGGCCACGATGCCTCCGGCGTGTTGCTCCTCGGCGGCGCCACATTGCCGTGGCTTGGGCCCCTTCATTACACGCCTCTCGTCAAGGCTACAACTTCGTTGCCGTACTTTGACCGGGTTGCTTACACAGTCCAACTAGAAGGGATTAAGGTTTCAGAGAAGTTGTTGCAGCTACCAAAGTCAGTGTTTGTACCCGACCACACCGGAGCGGGTCAAACAATGGTTGATTCAGGCACTCAATTCACTTTCCTTCTCGGGTCGGTTTACACCGCTTTGAAGAACGAGTTCTCGCTCCAAACCAAAGGGTTGCTAACACCGCTAGACGACCCGAACTTCGTGTTCCAAGGGGCGATGGACTTGTGTTACAAAGTTCCGGCGAGTGGGGCAAGTAGTCTTCCGGCGCTGCCAGCAGTGACACTGGTGTTTGATGGGGCGGAGATGAAGGTGTCAGGGGAGAGGCTATTGTATGAGGTGCAAGATGTGAGGAAGGGTAACGATTCAGTGTTTTGCTTCACTTTTGGAAACTCTGACTTGTTGGGAATTGAAGCGTATGTGATTGGTCATCATCATCAGCAAAACGTGTGGATGGAATTTGATTTGGTTAACTCTAGGGTTGGATTCACTGACACTAGCTGTGAGCTTGCTAGTCAACGGCTACGCATGACTCCTTAG 1335 0.5004 MASSESCSPTVPLLLPSLFFIILLQFQTSVSPVSSPQTQSFLILPLKTQTLPQPQAPSSRKLNFQHNVTLTVSLTIGSPPQNVTMVLDTGSELSWLHCKKLPNLNSIFNPLISSSYTPTPCTSPICTTQTRDFSIPVSCDPKKLCHVIVSYADASSMEGNLATETFFIGGSAQPGTVFGCMDSGYSSDSDEDSKTTGLMGMNRGSLSFVTQMGLPKFSYCISGHDASGVLLLGGATLPWLGPLHYTPLVKATTSLPYFDRVAYTVQLEGIKVSEKLLQLPKSVFVPDHTGAGQTMVDSGTQFTFLLGSVYTALKNEFSLQTKGLLTPLDDPNFVFQGAMDLCYKVPASGASSLPALPAVTLVFDGAEMKVSGERLLYEVQDVRKGNDSVFCFTFGNSDLLGIEAYVIGHHHQQNVWMEFDLVNSRVGFTDTSCELASQRLRMTP. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01044 444 Gene3D Acid Proteases 241 438 IPR021109 -
Seca8g01044 444 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 85 96 IPR001969 GO:0004190|GO:0006508
Seca8g01044 444 CDD pepsin_A_like_plant 69 433 IPR034161 -
Seca8g01044 444 FunFam Aspartic proteinase PCS1 238 437 - -
Seca8g01044 444 Pfam Xylanase inhibitor C-terminal 262 429 IPR032799 -
Seca8g01044 444 Gene3D Acid Proteases 61 233 IPR021109 -
Seca8g01044 444 ProSiteProfiles Peptidase family A1 domain profile. 70 429 IPR033121 -
Seca8g01044 444 FunFam Aspartic proteinase PCS1 61 234 - -
Seca8g01044 444 PANTHER ASPARTYL PROTEASE-RELATED 18 435 IPR001461 GO:0004190|GO:0006508
Seca8g01044 444 Pfam Xylanase inhibitor N-terminal 72 234 IPR032861 -
Seca8g01044 444 SUPERFAMILY Acid proteases 69 433 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01044 Seca-Chr8 14960045 14963212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01044 71 434 Miscellaneous Gene Families AT1G44130 24.742 2.21e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01044 - - aprc:113847930 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01044 8 14960045 14963212 Seca8g01044 8 14960045 14963212 ECH