Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01029 ATGGCTGCCTCAGTCTCCACTGTTGGAGCTGTCAACGGAACTCCATTGAGCTTGAACAGCTCTGGAGCTGGAGCTTCAGTTCCCAGTTCAACCTTCTTTGGCAGCAGCTTGAAGAAGGTTACTTCAAGGCTTCCCAACACCAAGATTTCCACTGGAAGTTTCAAAATTGTTGCAATTGATGAGGACAAGCAAACCGACAAAGACAGATGGAAGGGTTTGGCCTATGATGTTTCAGATGATCAGCAAGACATCACAAGGGGGAAGGGTATGGTTGATTCCCTTTTCCAAGCTCCAATGGAAGCTGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACCTCAGTACTGGACTTAGACAGTACAACTTGGACAACACCATGGATGGTTTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGTCCTTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAAGGTCAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCTATCATGATGAGTGCTGGAGAGCTTGAGAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGACAAAGATACCGTGAAGCTGCTGACATAATCAAGAAGGGAAAGATGTGCTGTCTCTTCATCAATGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACTCAGTACACAGTGAACAACCAGATGGTGAATGCCACACTCATGAACATTGCTGACAACCCCACAAATGTGCAACTCCCTGGTATGTACAACAAGGAAGAGAATCCACGTGTGCCCATCATTGTCACTGGTAACGATTTCTCAACACTCTATGCTCCTCTCATCCGTGATGGGCGTATGGAGAAATTCTACTGGGCACCTACAAGGGATGATCGTGTTGGTGTCTGCAAGGGAATTTTCCGCAGTGACAATGTCCCTGATGATGACATTGTTAAGCTTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTCAGGGCCAGAGTATATGATGATGAAGTGAGGAAGTGGGTCGCTGGTGTTGGTGTTGAAGGCGTTGGGAAGAAGCTTGTGAACTCAAGGGAAGGACCACCAACCTTTGAGCAACCCAAGATGAGTTTGGATAAGCTCTTGGAGTATGGTAACATGCTTGTCCAAGAGCAAGAGAATGTCAAGAGAGTCCAATTGGCAGACAAGTACTTAAGCGAGGCTGCTCTTGGTGATGCTAATGAAGATTCCATCAAGAGAGGAACATTCTATGGTTAG 1311 0.463 MAASVSTVGAVNGTPLSLNSSGAGASVPSSTFFGSSLKKVTSRLPNTKISTGSFKIVAIDEDKQTDKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMEAGTHYAVMSSYEYLSTGLRQYNLDNTMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRSDNVPDDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVAGVGVEGVGKKLVNSREGPPTFEQPKMSLDKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDSIKRGTFYG. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01029 436 PANTHER - 16 424 IPR044960 -
Seca8g01029 436 Gene3D - 307 419 - -
Seca8g01029 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 338 IPR027417 -
Seca8g01029 436 Pfam ATPase family associated with various cellular activities (AAA) 162 303 IPR003959 GO:0005524|GO:0016887
Seca8g01029 436 Gene3D - 122 306 IPR027417 -
Seca8g01029 436 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 122 306 - -
Seca8g01029 436 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 307 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01029 Seca-Chr8 14493838 14498095 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01029 - - vvi:100263871 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01029 8 14493838 14498095 Seca8g01029 8 14493838 14498095 ECH