Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01027 ATGTATGATGCTGCTATGTCTTTGGCAGAAGCAATGATTGAACTTGGTATTGCTATTGATGGAGGGAAAGACAGTCTTTCTATGGCAACCCATGCTGGAGGAGAAGTTGTTAAGGCCCCTGGAAATCTTGTAATCAGTGTTTATGTTACTTGTCCTGATATAACAAAAACAGTGACACCTGATCTTAAACTTGAAGATGATGGTATTTTACTTCATATAGATCTGGCAAAGGGAAAGCGGCGGTTAGGTGGATCTGCTCTTGCCCGGGCATTTGACCAAGTTGGGGATGAATGTCCTGATCTTGATGATATTCCTTACCTTAAAAAGGTCTTTGAAGGTGTTCAAGACCTTCTTACAGATGAACTGATCTCTGCTGGTCATGATATCAGTGATGGTGGGTTGCTAGTATGTGCATTAGAGATGGCATTTGCTTGGAATCGAGGATTCATCTTGGACTTGACTTCACATGGGAAGAGCCTTTTCCAAACACTCTATGCAGAAGAGCTTGGGCTAATTGTTGAGGTAAGCAAGAAAAATCTGGGTATTGTAATGGATAAATTGAGTGGTGTAGGTGTTATGGCTGAGATCATTGGTCAAGTAACTGTCACTCCATCAATAGAAGTTAAGGTTGATGGGGTAACTCATTTAAAAGAAAAAACCTCTATCCTTAGGGACATGTGGGAAGAAACCAGTTTTCAGCCGGAGAAGTTCCAAAGATTGGCATCTTGTGTGGATACTGAGAGAGAAGGACTAAAACATCGATTTGAACCGTCATGGAAACTGTCCTTTACTCCATCATTCACTGATGAAAAGTACATGTCTGCAACCATAAAACCTAAAGTTGCTGTGATTAGAGAAGAAGGAAGCAATGGTGACAGAGAAATGGCTGCAGCATTTCATGCAGCTGGTTTTGAACCATGGGATGTTACTATGTCAGACCTTCTTAATGGAGTGATCTCTTTGCAAGAGTTCCGTGGAATTGTGTTTGTTGGTGGATTTAGCTACGCTGATGTGCTTGATTCTGCCAAAGGTTGGTCTGCTAGCATAAGATTCAATGAGCACCTTTTAAAACAATTTCAGGAATTTTACAATCGTCCAGACACTTTCAGTCTTGGTGTATGTAATGGGTGTCAATTAATGGCTTTGCTGGGATGGGTACCAGGACCACAAGTTGGGGGTGTGCTTGGTGCTGGTGAGGATCTGTCACAACCAAGGTTCATTCACAACAAGTCAGGACGTTTTGAATGCTGTTTTACAAATGTGACAATAAAGGACTCACCAGCCATAATGTTCAAAGATATGGAAGATAGTACATTGGGGGTATGGGCTGCTCATGGTGAGGGAAGAGCATATTTCCCAGATGACAGCGTGTTGGATCGTATAGTTGGTTCAGATTTGGCTCCTGTAAGATACTGTGATGATGGTGGCAATCCAACTGAGACTTATCCTTTCAATGTGAATGGCTCTCCATTTAGGATAGCAGCTATTTGTTCTCCAGATGGAAGGCATCTTGCCATGATGCCTCATCCAGAACGTTGCTTCTTAACGTGGCAGTTCCCATGGTATCCAAAGCAGTGGGATATGGACAAGAAGGGGCCTAGTCCATGGTTGCTCATGTTCCAGAATGCAAGAGACTGGTGTTCCTGA 1647 0.4268 MYDAAMSLAEAMIELGIAIDGGKDSLSMATHAGGEVVKAPGNLVISVYVTCPDITKTVTPDLKLEDDGILLHIDLAKGKRRLGGSALARAFDQVGDECPDLDDIPYLKKVFEGVQDLLTDELISAGHDISDGGLLVCALEMAFAWNRGFILDLTSHGKSLFQTLYAEELGLIVEVSKKNLGIVMDKLSGVGVMAEIIGQVTVTPSIEVKVDGVTHLKEKTSILRDMWEETSFQPEKFQRLASCVDTEREGLKHRFEPSWKLSFTPSFTDEKYMSATIKPKVAVIREEGSNGDREMAAAFHAAGFEPWDVTMSDLLNGVISLQEFRGIVFVGGFSYADVLDSAKGWSASIRFNEHLLKQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGVLGAGEDLSQPRFIHNKSGRFECCFTNVTIKDSPAIMFKDMEDSTLGVWAAHGEGRAYFPDDSVLDRIVGSDLAPVRYCDDGGNPTETYPFNVNGSPFRIAAICSPDGRHLAMMPHPERCFLTWQFPWYPKQWDMDKKGPSPWLLMFQNARDWCS. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01027 548 CDD PurL_repeat2 1 200 - -
Seca8g01027 548 FunFam Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial 57 223 - -
Seca8g01027 548 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 280 524 - -
Seca8g01027 548 PANTHER PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE 1 548 - -
Seca8g01027 548 SUPERFAMILY Class I glutamine amidotransferase-like 276 547 IPR029062 -
Seca8g01027 548 SUPERFAMILY PurM C-terminal domain-like 66 263 IPR036676 -
Seca8g01027 548 FunFam Phosphoribosylformylglycinamidine synthase, putative 223 548 - -
Seca8g01027 548 SUPERFAMILY PurM N-terminal domain-like 1 59 IPR036921 -
Seca8g01027 548 CDD GATase1_FGAR_AT 281 544 - -
Seca8g01027 548 Pfam AIR synthase related protein, C-terminal domain 81 210 IPR010918 -
Seca8g01027 548 Pfam CobB/CobQ-like glutamine amidotransferase domain 278 547 - -
Seca8g01027 548 Gene3D - 38 223 IPR036676 -
Seca8g01027 548 SMART GATase_5_2 278 547 - -
Seca8g01027 548 Gene3D - 224 548 IPR029062 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01027 Seca-Chr8 14441181 14442827 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01027 K01952 - gmx:100818572 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01027 8 14441181 14442827 Seca8g01027 8 14441181 14442827 ECH