Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00956 ATGGAGACTGGCATAGCCTCCTACACATGTGGGGCTTTCCTGCATCCTAGTGTTTTTTCCAAGTACTCTCCACCCATCATGTTTACATCTTTTGGTTTCAGAGGTCTAAAATCAAGCTCTTTATTTGGAGAATCACTAAGATTGGATTTGGCATCCAAATCAACACTAAAGGTTTCAAAGATAAAGGAAGCTCCATTCATAACCAAATGTGAAATTGGTGACAGTCTGGAAGAATTCCTCACAAAGGCAACACCAGATAAGGGGCTGATCAGGTTGATGGTGTGCATGGGAGAAGCATTAAGAACCATTTCCTTCAAAGTGAAGACAGCTTCTTGTGATGGAACACAATGTGTTAATTCCTTTGGGGATGAGCAACTTGCTGTGGATTTGTTGGTTAACAAGCTTCTTTTTGAGGCCTTAAATTATTCTCACTTCTGTAAGTATGCTTGCTCAGAAGAAGTTCCTGAGCTTCAGGACATGGGAGGTCCAGTTGAAGGTGGATTCAGTGTTGCATTTGACCCCCTTGATGGTTCCAGCATTGTGGACACAAATTTCACAGTAGGCACCATCTTTGGAGTGTGGCCTGGAGATAAGTTGACAGGTGTCACTGGAAGAGATCAAGTTGCTGCAGCCATGGGAGTTTTGGGACCTAGAACCACATATGTCCTTGCTCTTAAGGACTTCCCTGGCACACATGAATTTCTTCTACTTGATGAAGGAAAATGGCAGCATGTCAAAGAGACCACACAAATTGGTGATGGAAAACTATTCTCCCCAGGAAATTTGAGAGCCACATTTGACAACCCCAGTTATGACAAGTTGATCAATTACTATGTCAATGAAAAATACACATTGAGATACACTGGAGGAATGGTGCCAGACGTCAACCAGATTATAGTAAAAGAAAAAGGCATCTTTACAAATGTTGCATCCCCATCTGCCAAAGCCAAGCTAAGATTGTTGTTTGAGGTAGCTCCTTTAGGCTTTTTGATTGAAAAAGCTGGAGGTTTCAGCAGTGATGGTCATCAATCTGTGCTAGACATGATCATCAGTAGCCTTGATGATAGAACTCAAGTTGCTTATGGGTCCAAGAATGAGATCATCCGTTTTGAAGAAACCTTGTACGGTTCATCCAGGCTCAAGGGCAGTGTACCTGTTGGAGCCACTGCTTAA 1173 0.4254 METGIASYTCGAFLHPSVFSKYSPPIMFTSFGFRGLKSSSLFGESLRLDLASKSTLKVSKIKEAPFITKCEIGDSLEEFLTKATPDKGLIRLMVCMGEALRTISFKVKTASCDGTQCVNSFGDEQLAVDLLVNKLLFEALNYSHFCKYACSEEVPELQDMGGPVEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGRDQVAAAMGVLGPRTTYVLALKDFPGTHEFLLLDEGKWQHVKETTQIGDGKLFSPGNLRATFDNPSYDKLINYYVNEKYTLRYTGGMVPDVNQIIVKEKGIFTNVASPSAKAKLRLLFEVAPLGFLIEKAGGFSSDGHQSVLDMIISSLDDRTQVAYGSKNEIIRFEETLYGSSRLKGSVPVGATA. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00956 390 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 67 247 IPR033391 -
Seca8g00956 390 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 253 373 IPR044015 -
Seca8g00956 390 SUPERFAMILY Carbohydrate phosphatase 70 373 - -
Seca8g00956 390 CDD FBPase 72 374 IPR000146 GO:0005975|GO:0016791
Seca8g00956 390 Gene3D - 71 247 - -
Seca8g00956 390 Gene3D - 248 388 - -
Seca8g00956 390 FunFam Sedoheptulose-1,7-bisphosphatase, chloroplastic 71 247 - -
Seca8g00956 390 Hamap Fructose-1,6-bisphosphatase class 1 [fbp]. 74 376 IPR000146 GO:0005975|GO:0016791
Seca8g00956 390 FunFam Sedoheptulose-1,7-bisphosphatase, chloroplastic 248 388 - -
Seca8g00956 390 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 74 374 IPR000146 GO:0005975|GO:0016791
Seca8g00956 390 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 141 161 IPR023079 GO:0005975|GO:0016791
Seca8g00956 390 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 125 140 IPR023079 GO:0005975|GO:0016791
Seca8g00956 390 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 255 271 IPR023079 GO:0005975|GO:0016791
Seca8g00956 390 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 201 219 IPR023079 GO:0005975|GO:0016791
Seca8g00956 390 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 285 305 IPR023079 GO:0005975|GO:0016791
Seca8g00956 390 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 347 371 IPR023079 GO:0005975|GO:0016791
Seca8g00956 390 ProSitePatterns Fructose-1-6-bisphosphatase active site. 316 328 IPR020548 GO:0005975|GO:0042578
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00956 Seca-Chr8 13144488 13147352 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00956 K01100 - gmx:100786122 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00956 8 13144488 13147352 Seca8g00956 8 13144488 13147352 ECH