Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00919 ATGATGCCTTTTATCACCATTTTTCTTCTCTGTTTCGCTTCCCAAACCTTGCTCTACAGCTTGCCCTCAACAACACTTGCTCTGGTTCTGAAATCAGAGACTGATAAACTCGCTTTGCTTGATTTGAAGGAAAAGCTTACTAATGGCATGCCTGATTCTCTGCCATCATGGAATGAATCTCTGCATTTCTGTGAATGGCAGGGTGTTACATGCGGTCATCGCCACATGAGAATCACTGCCTTGCATTTGGAAAATGAAGACTGGGGTGGTACTCTTGGACCCACCTTGGCAAATCTAACCTTCCTCAAAATGCTCAAACTTTCAAACATCAACCTGCATGGTCAAATTCCAACACAAATCGGTCGTTTGAAAAGGTTGCAGGTTCTTGACTTAAGCAGGAACAATCTTCAGGGAGAGGTTCCTATGGAGCTTACCAACTGCACCAGTCTCCAAGTAATTAACTTGTTGTACAATCAACTCACTGGAAAAGTTCCCTCATGGTTTGGATCTATGATTCACCTTACTAAGTTGCTTCTTGGTGCCAATAATCTAGTTGGTACTATCCCACCTTCTTTGGGAAATATGTCATCACTACTGAATATAACACTTGCAAGAAATCAATTGGAAGGAAGCATACCTTATGCTTTGGGTAGGTTGTCAAATTTGAAAGAGTTGAATCTGGGTTTAAATAACTTATCAGGTATAATCCCTCATTGTCTCTACAACCTTTCAAATATTCAAGTTTTTGTTCTCGGGATAAACCAGTTATTTGGTACTCTTCCATCAAATATACATCTTGCTTTTCCCAATCTTCAAGCATTCCTGGTAGGATGGAACCACTTAACCGGGACTTTCCCGTCTTCAATATCCAACATCACTGGATTACGATGGTTTGATATATCCTCAAATGGTTTTAATGGGCCAATACCTCCTACTTTGGGAAGCTTAAACAAACTTCGGAGGTTCAACATTGGTTATAATAATTTCGGGAGTGGAAGAGCTCACGATCTGGATTTCCTTTCCTCACTTACCAATTGTACTCAATTGCAAAAGCTTATTTTGGATAGCAATAGATTTGGTGGTGCGTTGCCAGATTTTGTAGGCAACTTATCCACACATCTAAATTTGCTTAGTATGGAAAGGAATCAAATATCTGGAGTGATACCTGAAGGAATTGGACAACTAATCGGTTTAACTTCCTTTGATTTGATGGAGAATTTCCTTGAGGGAACAATTCCAGATTCAATTGGAGAGCTTAAGAATCTAGGAAGATTGGCCTTGCAAGAAAACAAATTATCTGGAAAAATCCCTGCTGTTATTGGCAATCTTACTATGTTGTCTGAACTTTATCTGCGCACCAATCAATTTGAAGGAAGCATTCCATTTACCCTCAAATACTGCACCCGGTTGCAGTCATTTGGTGCATGTGAGAACAACTTAAGTGGTGATATACCTAATCAAACATTTGGCTATCTAGAAAGCTTAATAGAGCTTGACTTGTCCAATAACTCCTTATCAGGTTCCATTCCTTCAGAGTTTGGTAACTTGAAGCAGCTTTCCATATTATATCTAAGCGCAAACAAGCTGTCTGGTGAAATTCCAAAGGAACTTGGTGCTTCTTTGGAATTAACAGAGCTGGTGCTGGAGAGAAACATTTTCAATGGAACTATACCTTCCTTCTTGGGCTCCTTAAGATCCCTTGAAATCTTAGATCTTTCTTACAACAATTTCTCAAGCAAAATACCCCATGAACTACAAAATCTAACATTGCTGAATTCTTTGGACTTGTCTTTTAACCATCTCTATGGTGAGGTCCCCACAGGAGGTGTCTTCAATAACGTCACAGCAATTTCACTAATTGGAAATAAGAATCTTTGTGGGGGGATACCTCAATTGAAGCTGCCTGCATGCTCTATCTCTCCTTCAAAGAAGCACAAGACGTCTCTTGAGAAGAATGTTATACTTATCACTGTAGTTGGCGGGGTTTTGATGTCTTTAATAGTATTTATCAGTATCTGTTATCTCAGAAAAAAGGCCAAAACATTATCTTCTTTACCATTTCTTCAAAATAGGTACTTGAAGGTTTCTTATGGAGAGCTACATGAAGCAACCAATGGATTTTCTTCATCCAATTTAGTAGGCACAGGAAGCTTTGGTTCTGTATACAAAGGATCTCTTGTCCATTTTGAAGGACCTATTGCAGTAAAGGTGTTGAACCATGAAACACGTGGGGCATCCAAGAGTTTCGTGGCTGAATGCAAAGTTCTGGAAAAGATAAAGCACCAAAATCTTCTCAAGCTCCTGACTTTTTGTTCTAGTGTTGATTATAACGGGGAAGTTTTCAAGGCTCTAGTTTTTGAGTTCATGCCTAATGGGAGTCTAGAAAGCTTGCTGCACAGCAATGAACAGCATGAGCCTAGAAGTCTAAATCTCAACCTTACACGTAGGTTGAATATTGCTCTTGATGTAGCTCAGGCATTGGATTATCTTCACCATAATTCCGAGCAAGCTGTAGTTCACTGTGATATTAAGCCGAGCAACATTCTTCTTGATGATAACATTGTTGCCTACTTGGGAGACTTTGGCTTAGCTAGGTTCCTTCATGAAGCCAACGGGCATTCCAGTAAAGATCAAGTTAGTTCCTCTGTGATTAAGGGAACCATTGGATATGTTGCCCCAGAGTATGGAGTAGGTGGCCCAGTATCACCACAAGGAGATATCTTCAGTTATGGAATTCTTCTGTTGGAGATGCTCACCGGAAAGAGACCAACAGATAGCATGTTTGGTGAAGGTCTAAGCCTACACAACTTCTGTAAGATGGCAATTCCAGAACGAATCACTGAGAAAGTGTATTGGCGTTTGCATATCCCATTTGCTGGAGAAGGGACAGGGGCTATGGAAGACAACATCAGGGAGTGTCCGGTGTCCTTTGCTAGGATTGGAATTGCATGTTCTGCAGAATTCCCAACTCAGCGAATGGGCATAAAAGACGTCATAGCAGAGTTGCATGCAATTAAACAGAAGCTGCCACCCCAGGAACCTTTGCTGTGA 3051 0.4058 MMPFITIFLLCFASQTLLYSLPSTTLALVLKSETDKLALLDLKEKLTNGMPDSLPSWNESLHFCEWQGVTCGHRHMRITALHLENEDWGGTLGPTLANLTFLKMLKLSNINLHGQIPTQIGRLKRLQVLDLSRNNLQGEVPMELTNCTSLQVINLLYNQLTGKVPSWFGSMIHLTKLLLGANNLVGTIPPSLGNMSSLLNITLARNQLEGSIPYALGRLSNLKELNLGLNNLSGIIPHCLYNLSNIQVFVLGINQLFGTLPSNIHLAFPNLQAFLVGWNHLTGTFPSSISNITGLRWFDISSNGFNGPIPPTLGSLNKLRRFNIGYNNFGSGRAHDLDFLSSLTNCTQLQKLILDSNRFGGALPDFVGNLSTHLNLLSMERNQISGVIPEGIGQLIGLTSFDLMENFLEGTIPDSIGELKNLGRLALQENKLSGKIPAVIGNLTMLSELYLRTNQFEGSIPFTLKYCTRLQSFGACENNLSGDIPNQTFGYLESLIELDLSNNSLSGSIPSEFGNLKQLSILYLSANKLSGEIPKELGASLELTELVLERNIFNGTIPSFLGSLRSLEILDLSYNNFSSKIPHELQNLTLLNSLDLSFNHLYGEVPTGGVFNNVTAISLIGNKNLCGGIPQLKLPACSISPSKKHKTSLEKNVILITVVGGVLMSLIVFISICYLRKKAKTLSSLPFLQNRYLKVSYGELHEATNGFSSSNLVGTGSFGSVYKGSLVHFEGPIAVKVLNHETRGASKSFVAECKVLEKIKHQNLLKLLTFCSSVDYNGEVFKALVFEFMPNGSLESLLHSNEQHEPRSLNLNLTRRLNIALDVAQALDYLHHNSEQAVVHCDIKPSNILLDDNIVAYLGDFGLARFLHEANGHSSKDQVSSSVIKGTIGYVAPEYGVGGPVSPQGDIFSYGILLLEMLTGKRPTDSMFGEGLSLHNFCKMAIPERITEKVYWRLHIPFAGEGTGAMEDNIRECPVSFARIGIACSAEFPTQRMGIKDVIAELHAIKQKLPPQEPLL. 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00919 1016 SMART LRR_typ_2 516 540 IPR003591 -
Seca8g00919 1016 SMART LRR_typ_2 588 613 IPR003591 -
Seca8g00919 1016 SMART LRR_typ_2 492 515 IPR003591 -
Seca8g00919 1016 SMART LRR_typ_2 123 147 IPR003591 -
Seca8g00919 1016 SMART LRR_typ_2 219 242 IPR003591 -
Seca8g00919 1016 SMART LRR_typ_2 419 443 IPR003591 -
Seca8g00919 1016 SMART LRR_typ_2 564 587 IPR003591 -
Seca8g00919 1016 SMART LRR_typ_2 171 195 IPR003591 -
Seca8g00919 1016 Pfam Protein kinase domain 709 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00919 1016 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 72 337 - -
Seca8g00919 1016 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Seca8g00919 1016 Gene3D Ribonuclease Inhibitor 332 646 IPR032675 -
Seca8g00919 1016 ProSitePatterns Protein kinases ATP-binding region signature. 713 736 IPR017441 GO:0005524
Seca8g00919 1016 Gene3D Ribonuclease Inhibitor 32 189 IPR032675 -
Seca8g00919 1016 Pfam Leucine rich repeat 542 601 IPR001611 GO:0005515
Seca8g00919 1016 Pfam Leucine rich repeat 477 529 IPR001611 GO:0005515
Seca8g00919 1016 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515
Seca8g00919 1016 Gene3D Ribonuclease Inhibitor 190 331 IPR032675 -
Seca8g00919 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672|GO:0006468
Seca8g00919 1016 ProSiteProfiles Leucine-rich repeat profile. 566 589 IPR001611 GO:0005515
Seca8g00919 1016 SMART serkin_6 707 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00919 1016 Gene3D Phosphorylase Kinase; domain 1 670 788 - -
Seca8g00919 1016 SUPERFAMILY RNI-like 268 607 - -
Seca8g00919 1016 FunFam LRR receptor-like serine/threonine-protein kinase EFR 678 788 - -
Seca8g00919 1016 SUPERFAMILY L domain-like 33 329 - -
Seca8g00919 1016 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 789 1013 - -
Seca8g00919 1016 ProSiteProfiles Protein kinase domain profile. 707 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00919 1016 PANTHER RECEPTOR-LIKE PROTEIN 55 405 1007 - -
Seca8g00919 1016 FunFam LRR receptor-like serine/threonine-protein kinase EFR 338 643 - -
Seca8g00919 1016 SUPERFAMILY Protein kinase-like (PK-like) 682 1002 IPR011009 -
Seca8g00919 1016 Gene3D Transferase(Phosphotransferase) domain 1 789 1012 - -
Seca8g00919 1016 PRINTS Leucine-rich repeat signature 495 508 - -
Seca8g00919 1016 PRINTS Leucine-rich repeat signature 564 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00919 Seca-Chr8 12354357 12358275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00919 32 1009 Receptor kinase-like Gene Family AT3G47570 44.422 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca8g00919 Pkinase 4.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00919 - - gsj:114384365 1410.97