Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00909 ATGGGAAATAACATGGTAACCTACAACAAGTACAAAAGTTTCTTGTTCTTTATCAGAAAGTATAAGGTCACAGAACTAGTTCCACCTCAGGACCTCAAAGAGGTGTTTTCAAAGTTCACCGGAGGAGGGTCCCACATGTCTTCAGAGCAGCTCCACCGGTTCCTGGTTGAGCACCAGGGAGAGGAGGACTGCACCTTAGAGGATTCAGAGAGAATTGTTGAGAAGGTTTTGCAAAAGAGAAGGCCTAATCAAGAAACTGCTAATGTTGATCAAAATAGAGAAAAGGAAATCACCCTTGAAGACTTCTTCCATTTTTTGCTTCATGATGATTTCAACACTCCCTTGAAAACTGAGGTACATCATGATATGAGTGCTCCATTGTCACATTATTTCATATACACAGGACATAATTCCTATCTTACTGGGAATCAACTGAGCAGTGATTGCAGTGAAGAGCCAATCATTAAGGCTTTGCAACGAGGCGTGCGTGTTATTGAACTGGATTTATGGCCAACTTCCAATAAAGATGATATTAAAGTAGATCATGGATGGACACTTACCAATCCTGTCTCAGCTATCAAATGTCTAAAATCCATAAAGGAATATGCTTTTATTGCATCTCAGTACCCTGTGATCATAACCATTGAAGACCATCTTACAGCAGATCTTCGAGCTAAATTTGCAGATATGGCAACTCAAATATTTGGAGAAATGCTTTATTACCCTGAGTCTGATAGTTTAACAGAATTCCCTTCACCAGACTCATTGAAAAATAGAGTGATTATATCAACCAAACCCCCAAAAGAATGTTTTGAGTCCAACCGTATCAAGGAAAATGGCAACTGTCCCATGTTAGATGGAAGTGAATCATCTGATGAAGAATCATCAGGAAAGGAATCACCAGACTCTAGGAATGAAAATGGAAGTGATCGTGATGAGGGAGACACAAGTACATGTGAATGTGTTCAAAGATCATATCAGGAGTGTTCACCTGATTACAAACGAATAATCACAATCCATAATAGGAAACTCAAGGGTAGCCTTAAGGATAAATTGAAAACTGATGGTGAGCTTAGACGTCTAAGTTGGAGTGAGACAACCCTTGAAAAGGCTTCAGAATCTCATGGAACTGACATTATTAGGTTCACACAGAAGAATATCCTCAGGGTATACCCAAGAGCCATTCGTGGGCATGGCAAATCGCTCTGGTTGATGCAGGGGATGTTCAGGGCAAATGGAGGGTGTGGTTATGTAAAAAAGCCTCAAATTTTAATGCAGGAACATCAATGTGACAATGAGTTTGATCCTACAAGGATACTGCCAGTGAAGAAGACATTAAAGGTAAAAGTATACATGGGACATGGGTGGAACTTAGATTTCAGTCCTACACACTTTGATAAGTGCTCTCCACCAGACTTTTACACAAAGATCTGTATTGTTGGAATGCATGCTGATATTGCAAAGAAGAAAACAAAGGTAGTCATGGACAACTGGTTTCCTCTTTGGGATGAAGAGTTTGAGTTCCCTTTGACTGTTCCAGAGCTTGCATTGCTTCAGATACAAGTGAGGGACAAAGATCAGGGAAAGGATGACTTTGCCGGGCAAACTTGTTTGCCAATATCAGAGCTAAAACTTGGATTTCGTTCAGTCCCTTTATATAACAAAAAAGAGTGCTTCAACAGAAAGTTCGCCGTCTCCGAACAGGCACCGCCGCCAGACGTCAAGGAGGCGTTCTCCGAGTTCACCGAAGGCGGTTCCTCCATGTCCGCCGAACAGCTCTGGAGATTTCTGTTGGAACACCAACTCGAACCGGACGTAACCGCAGAGGATTCGAACCTTATTGTGGATCACGTTTTGCAATCGCGGAAACCAACTCAGGAAAACGAAACCGATACAGGGCATAATTCCTACCTGACTGGGAATCAGCTGAGCAGCGATTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACTAGGTGTCCGAGTAATTGAACTAGATTTATGGCCAAATTCAACTAAAGATGATATCGTTGTAGTTCATGGAAGGACACTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGCATGCTTTTGTTAAATCTCATTACCCAATGACAACTCAAGTATTTGGAGATATGCTCTATTATCCTCAGGCAGATCCTCTAACAGAATTCCCCACTCCAGAATCACTGAAAGATCGAATTTTGATATCAACCAAACCACCAAAAGAATATCTTGAATCCAAGCAATTTAAGGATAGTGACAGTGAAAGAAAATCAGACCAGCAGGGTGCACCTGAGTACAAACGTTTGATCACAATCCATGCTGGGAAACCGAAGGGTCATGTAAAGGACCACCTAAAAATTGCTGGGGATAAGAATATTCTGAGGGTGTATCCAAAGGGAACACGTGTCACGTCCTCAAATTACAGGCCACATATAGGATGGATGTACGGAGCTCAGATGGTCGCATTTAACATGCAGGGGCATGGAAAATCACTGTGGTACATGCAAGGGATGTTTAGAGCAAATGGAGGGTGTGGGTATGTGAAAAAGCCTGCGCTTCTGATGGAAAAAGGCTCCGATAATGAGGTCTTTGATCCTAAAAGAACATTGCAAGTGAAGAAGACATTAAAGACCAGGGTAATTCAAGATGATTGGTTTCCCGTGTGGGATGAGGAGTTTGAATTTCCTTTGACCGTTCCAGAGCTGGCTTTGCTCCGGATAGAAGTTCGAGAGTATGATAAGCATGAAAAGGATGACTTTGGTGGCCAAACATGTTTACCAGTCTCTGAGCTGAGATCTGGATTCAGGGTAGTCCCTCTATATGATCAGAAGAGCGAGAAAATGAAATCTGTAAAGCTTTTAATGCGGTTTCAGTTTAGTTGA 2901 0.4192 MGNNMVTYNKYKSFLFFIRKYKVTELVPPQDLKEVFSKFTGGGSHMSSEQLHRFLVEHQGEEDCTLEDSERIVEKVLQKRRPNQETANVDQNREKEITLEDFFHFLLHDDFNTPLKTEVHHDMSAPLSHYFIYTGHNSYLTGNQLSSDCSEEPIIKALQRGVRVIELDLWPTSNKDDIKVDHGWTLTNPVSAIKCLKSIKEYAFIASQYPVIITIEDHLTADLRAKFADMATQIFGEMLYYPESDSLTEFPSPDSLKNRVIISTKPPKECFESNRIKENGNCPMLDGSESSDEESSGKESPDSRNENGSDRDEGDTSTCECVQRSYQECSPDYKRIITIHNRKLKGSLKDKLKTDGELRRLSWSETTLEKASESHGTDIIRFTQKNILRVYPRAIRGHGKSLWLMQGMFRANGGCGYVKKPQILMQEHQCDNEFDPTRILPVKKTLKVKVYMGHGWNLDFSPTHFDKCSPPDFYTKICIVGMHADIAKKKTKVVMDNWFPLWDEEFEFPLTVPELALLQIQVRDKDQGKDDFAGQTCLPISELKLGFRSVPLYNKKECFNRKFAVSEQAPPPDVKEAFSEFTEGGSSMSAEQLWRFLLEHQLEPDVTAEDSNLIVDHVLQSRKPTQENETDTGHNSYLTGNQLSSDCSDVPIIKALQLGVRVIELDLWPNSTKDDIVVVHGRTLTTPVSLIQCLKSIKEHAFVKSHYPMTTQVFGDMLYYPQADPLTEFPTPESLKDRILISTKPPKEYLESKQFKDSDSERKSDQQGAPEYKRLITIHAGKPKGHVKDHLKIAGDKNILRVYPKGTRVTSSNYRPHIGWMYGAQMVAFNMQGHGKSLWYMQGMFRANGGCGYVKKPALLMEKGSDNEVFDPKRTLQVKKTLKTRVIQDDWFPVWDEEFEFPLTVPELALLRIEVREYDKHEKDDFGGQTCLPVSELRSGFRVVPLYDQKSEKMKSVKLLMRFQFS. 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00909 966 ProSiteProfiles C2 domain profile. 804 948 IPR000008 -
Seca8g00909 966 CDD C2_PLC_like 443 556 - -
Seca8g00909 966 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 749 860 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Seca8g00909 966 SMART plcx_3 632 744 IPR000909 -
Seca8g00909 966 SMART plcx_3 121 265 IPR000909 -
Seca8g00909 966 Pfam Phosphatidylinositol-specific phospholipase C, X domain 123 265 IPR000909 -
Seca8g00909 966 Pfam Phosphatidylinositol-specific phospholipase C, X domain 624 709 IPR000909 -
Seca8g00909 966 ProSitePatterns EF-hand calcium-binding domain. 90 102 IPR018247 -
Seca8g00909 966 FunFam Phosphoinositide phospholipase C 440 564 - -
Seca8g00909 966 CDD C2_PLC_like 863 966 - -
Seca8g00909 966 Gene3D - 24 114 - -
Seca8g00909 966 FunFam Phosphoinositide phospholipase C 27 117 - -
Seca8g00909 966 Gene3D Phosphatidylinositol (PI) phosphodiesterase 118 437 IPR017946 GO:0006629|GO:0008081
Seca8g00909 966 MobiDBLite consensus disorder prediction 751 770 - -
Seca8g00909 966 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 362 393 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Seca8g00909 966 SMART C2_3c 849 946 IPR000008 -
Seca8g00909 966 SMART C2_3c 445 552 IPR000008 -
Seca8g00909 966 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 396 424 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Seca8g00909 966 SMART plcy_3 772 861 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Seca8g00909 966 SMART plcy_3 333 425 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Seca8g00909 966 Pfam Phosphoinositide-specific phospholipase C, efhand-like 29 110 IPR015359 -
Seca8g00909 966 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 879 965 IPR035892 -
Seca8g00909 966 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 445 556 IPR035892 -
Seca8g00909 966 Gene3D C2 domain 440 568 IPR035892 -
Seca8g00909 966 Gene3D C2 domain 870 966 IPR035892 -
Seca8g00909 966 MobiDBLite consensus disorder prediction 751 769 - -
Seca8g00909 966 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 772 858 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Seca8g00909 966 SUPERFAMILY EF-hand 5 123 IPR011992 -
Seca8g00909 966 MobiDBLite consensus disorder prediction 291 318 - -
Seca8g00909 966 SUPERFAMILY PLC-like phosphodiesterases 632 872 IPR017946 GO:0006629|GO:0008081
Seca8g00909 966 ProSiteProfiles C2 domain profile. 424 554 IPR000008 -
Seca8g00909 966 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 121 265 - -
Seca8g00909 966 Gene3D Phosphatidylinositol (PI) phosphodiesterase 630 869 IPR017946 GO:0006629|GO:0008081
Seca8g00909 966 PRINTS Phospholipase C signature 152 172 IPR001192 GO:0035556
Seca8g00909 966 PRINTS Phospholipase C signature 820 838 IPR001192 GO:0035556
Seca8g00909 966 PRINTS Phospholipase C signature 126 144 IPR001192 GO:0035556
Seca8g00909 966 PRINTS Phospholipase C signature 249 266 IPR001192 GO:0035556
Seca8g00909 966 PRINTS Phospholipase C signature 799 820 IPR001192 GO:0035556
Seca8g00909 966 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 623 714 - -
Seca8g00909 966 Pfam C2 domain 445 546 IPR000008 -
Seca8g00909 966 Pfam C2 domain 870 940 IPR000008 -
Seca8g00909 966 SUPERFAMILY PLC-like phosphodiesterases 121 426 IPR017946 GO:0006629|GO:0008081
Seca8g00909 966 SUPERFAMILY EF-hand 538 622 IPR011992 -
Seca8g00909 966 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 13 396 IPR001192 GO:0035556
Seca8g00909 966 MobiDBLite consensus disorder prediction 271 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00909 Seca-Chr8 12106281 12122162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00909 553 965 Acyl Lipid Metabolism Gene Families AT2G40116 45.638 2.99e-157 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00909 K05857 - gmx:100820253 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00909 8 12106281 12122162 Seca8g00909 8 12106281 12122162 ECH
Seca8g00909 8 12106281 12122162 Seca8g00909 8 12106281 12122162 PCT