Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00908 ATGTCCAAACAGACTTACAGTGTCTGCTTCTGCTGGCGCCGGCGGTTCAAGCTCGCCTTATCGGAGGCTCCGCCGGAGATCAAGACCCTTTTCGACCAGTACTCAGAGAATGAACTCATGACAGCTTCTCACCTTCAAAGGTTCTTGGTTGAAGTGCAGAAGCAAGAAAAAGCCACTGAAGAGGAAGCACAAGCCATCATAGATAGCTTCAAGCATTTCCATCGCAGGGGTGCTGGCCTCAATCTTGAAACTTTCTTCAAATATCTCTTCGGTGACAGTAACCCACCTCTACCTTCTCTTGGGGTGCACCATGATATGACTCTACCCTTGTCTCATTATTTCATATATACTGGCCATAATTCCTATCTAACAGGGAATCAGCTCAGCAGTGACTGCAGTGATGTCCCCATCATAAATGCACTGAAGAGAGGTGTAAGGGTGATTGAATTGGACATATGGCCTAATGCATCTAAGGACAATGTGGATGTTCTTCACGGAAGGACATTGACTACTCCTGTGGAGCTCATCAGATGTTTAAGGTCTATTAAGGAACATGCCTTTTCCGCATCAGAATTTCCAGTTGTAATAACCCTAGAAGATCACCTTACACCGGATCTTCAGGCTAAAGTGGCTGAGATGGTTACTCAAACATTTGGAGACATACTATTTACTCCAACCTCAGAAAACTTGAAGGAATTCCCGTCTCCTGAATCACTTAAAAAGAGGATTATTATATCAACCAAACCACCTAAGGAGTACCTTGAGGTAAAAGAAAAGGAAAAGGGGGATGATTCACAGCAGGGAAAGGCTTCAGGCGATGATGAAGCTTGGGGGAAGGAAGTCCCGAGCATGAGAAGTGGTTCTATAGCAGATTACAAGGAAAGCAATGTTGATAAAGAAGAGTTTAAAGATGAGGAAGATTTTGACGAATCAGATAAGTCACAACATAATGAAGCTCCAGAGTATAGACATCTGATTGCCATTCATGCTGGGAAGCCTAAAGGTGGATTAGAGGCATGGCTCATAGTAGATCCTGATAAAGTCAGACGTGTAAGTTTAAGTGAGCAACAGCTTGAAAAGGCTGCTATAACTCATGGAAAAGAAATTGTCAGGTTTACTCAGCGGAATATTCTGAGGGTGTATCCAAAAGGTACTCGCATTGACTCATCAAATTATAACCCATTGATTGGGTGGGTGCATGGAGCTCAAATGGTTGCATTTAACATGCAGGGGTATGGGAGATCACTTTGGTTGATGCATGGAATGTTCAGAGCCAATGGAGGGTGTGGTTTTGTTAAAAAGCCCGATTTTCTATTAAAGACCGGTCCAAATAATGAGATCTTCGATCCTAAAGCCAAGTTACCTGTGAAGACTACTTTGAAGGTGACTGTATATATGGGAGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATACTCACCTCCAGACTTTTATGCAAGAGTGGGTATTGCTGGGGTCCCTAATGATACTATAATGAAGAAAACAAAGGCAATAGAGGATAACTGGTTGCCTACATGGAATGAGGTATTTGAGTTCCCACTTACAGTTCCAGAATTGGCTCTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAAAAAGATGACTTTGGTGGCCAAACATGCCTACCTGTTTGGGAACTAAGAAGTGGAATTCGAGCTGTTCCATTGCATAGCCAGAAGGGAGATAAATACAACTCTGTAAAGCTTCTTATGCGCTTTGAATTTTATTGA 1764 0.4252 MSKQTYSVCFCWRRRFKLALSEAPPEIKTLFDQYSENELMTASHLQRFLVEVQKQEKATEEEAQAIIDSFKHFHRRGAGLNLETFFKYLFGDSNPPLPSLGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDVPIINALKRGVRVIELDIWPNASKDNVDVLHGRTLTTPVELIRCLRSIKEHAFSASEFPVVITLEDHLTPDLQAKVAEMVTQTFGDILFTPTSENLKEFPSPESLKKRIIISTKPPKEYLEVKEKEKGDDSQQGKASGDDEAWGKEVPSMRSGSIADYKESNVDKEEFKDEEDFDESDKSQHNEAPEYRHLIAIHAGKPKGGLEAWLIVDPDKVRRVSLSEQQLEKAAITHGKEIVRFTQRNILRVYPKGTRIDSSNYNPLIGWVHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGFVKKPDFLLKTGPNNEIFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYARVGIAGVPNDTIMKKTKAIEDNWLPTWNEVFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLHSQKGDKYNSVKLLMRFEFY. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00908 587 PRINTS Phospholipase C signature 135 155 IPR001192 GO:0035556
Seca8g00908 587 PRINTS Phospholipase C signature 377 398 IPR001192 GO:0035556
Seca8g00908 587 PRINTS Phospholipase C signature 398 416 IPR001192 GO:0035556
Seca8g00908 587 PRINTS Phospholipase C signature 109 127 IPR001192 GO:0035556
Seca8g00908 587 PRINTS Phospholipase C signature 232 249 IPR001192 GO:0035556
Seca8g00908 587 PRINTS Phospholipase C signature 553 563 IPR001192 GO:0035556
Seca8g00908 587 SUPERFAMILY EF-hand 16 104 IPR011992 -
Seca8g00908 587 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 586 IPR001192 GO:0035556
Seca8g00908 587 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 89 IPR015359 -
Seca8g00908 587 Pfam C2 domain 460 560 IPR000008 -
Seca8g00908 587 CDD PI-PLCc_plant 103 426 - -
Seca8g00908 587 Gene3D Phosphatidylinositol (PI) phosphodiesterase 101 452 IPR017946 GO:0006629|GO:0008081
Seca8g00908 587 Gene3D - 22 97 - -
Seca8g00908 587 Pfam Phosphatidylinositol-specific phospholipase C, X domain 106 248 IPR000909 -
Seca8g00908 587 MobiDBLite consensus disorder prediction 254 280 - -
Seca8g00908 587 SUPERFAMILY PLC-like phosphodiesterases 104 440 IPR017946 GO:0006629|GO:0008081
Seca8g00908 587 SMART plcx_3 104 248 IPR000909 -
Seca8g00908 587 SMART plcy_3 322 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Seca8g00908 587 FunFam Phosphoinositide phospholipase C 454 587 - -
Seca8g00908 587 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 459 586 IPR035892 -
Seca8g00908 587 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 351 437 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Seca8g00908 587 FunFam Phosphoinositide phospholipase C 21 99 - -
Seca8g00908 587 Gene3D C2 domain 454 587 IPR035892 -
Seca8g00908 587 SMART C2_3c 459 567 IPR000008 -
Seca8g00908 587 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 104 248 - -
Seca8g00908 587 CDD C2_PLC_like 457 587 - -
Seca8g00908 587 ProSiteProfiles C2 domain profile. 440 569 IPR000008 -
Seca8g00908 587 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 352 438 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Seca8g00908 587 MobiDBLite consensus disorder prediction 254 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00908 Seca-Chr8 12092522 12097603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00908 1 586 Acyl Lipid Metabolism Gene Families AT3G55940 70.000 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00908 K05857 - gmx:547864 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00908 8 12092522 12097603 Seca8g00908 8 12092522 12097603 ECH