Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00884 ATGGATAAGGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGACTTTCCAGTTGCCATGCAGATATCCCACAAATACAATTTGATTTATGTGATTACCAAACTTGGCCTACTTTTTGTCTATGATTTGGAGACAGCTACTGCTGTATATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACATCAGAAGCTACATCAGTGGGAGGCTTTTATGCCATTAACAGGAGAGGCCAGGTTTTATTGGCTACCGTTAATGAACAAACCATTGTGAATTTTGTCAGCGGTCAATTAAACAATTTGGAGCTAGCAGTTAGTCTTGCCAAAAGAGGAAATCTTCCTGGTGCTGAAAAGCTGGTAGTGGAGCGTTTTCAGGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAATCCCCACAAGGAATCCTTCGTACACCTGACACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTGTTGCAGTATTTTGGAACACTTCTAACAAGGGGAAAGCTGAACGCCTTCGAGTCATTAGAGTTGTCTCGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTTGTTAAGACTGTGGACAATGATCTTGCTTTAAAAATATATATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGGAGAGAGTTTGACAAAATTCTGATCTACTCTAAGCAGGTTGGGTACACACCTGACTACCTCTTCCTTTTGCAAACAATTCTCAGGACAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCGGTTGATTACAACACCATAACTGATCTATTTCTTCAGAGGAACCTGATCCGTGAGGCAACAGCTTTTCTCCTGGATGTTTTAAAGCCAAATCTACCAGAACATGGGTTCCTTCAGACAAAGGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATTTTGGGTAATGGCATGTTCAGCCATTATGACCGTCCTCGTGTTGCACAACTCTGTGAAAAAGCTGGCCTTTACGTGCGAGCTTTGCAACATTACACAGAGCTACCAGATATAAAGCGTGTGATTGTTAATACACATGCAATTGAGCCTCAGCCACTTGTAGAGTTTTTTGGTACGCTATCACGAGAATGGGCTTTAGAGTGCATGAAAGACCTGTTGCTGGCCAATCTTAGGGGCAACCTACAGATCATTGTGCAGGTTGCTAAAGAATATTGTGAACAATTGGGCGTTGATTCCTGCATAAAAATTTTTGAGCAGTTTAGGTCATATGAAGGACTGTACTTTTTCCTTGGATCATATTTGAGCTCCAGTGAGGATCCTGACATTCACTTTAAGTACATTGAAGCAGCAGCAAAGACTGGTCAAATCAAGGAGGTCGAGCGTGTTACAAGAGAATCCAATTTCTATGATCCCGAGAAAACGAAGAACTTTCTAATGGAGGCTAAGCTTCCAGATGCACGACCTTTAATTAATGTTTGTGATCGTTTTGGATTTGTTCCAGATCTAACACACTATCTCTACACAAACAACATGCTTCGCTACATTGAAGGTTACGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTTGGGCAGCTGCTAGATGATGAGTGTCCAGAAGATTTTATCAAAGGTTTGATTCTTTCTGTTCGTTCGTTACTGCCAGTGGAGCCCCTTGTGGAGGAATGCGAGAAGAGGAATCGGCTTCGTTTGCTCTCACAGTTCTTGGAACATCTCGTAAGTGAGGGAAGCCAAGATGTACATGTTCACAATGCACTGGGAAAAATTATCATTGACAGCAACAACAACCCAGAACATTTTCTCACGACCAACCCATACTATGATTCTCGAGTTGTGGGTAAGTATTGTGAGAAACGTGACCCCACCTTGGCGGTTGTAGCTTACCGGCGAGGACAATGTGATGATGAACTTATCAATGTCACCAACAAAAATTCTTTGTTCAAACTGCAAGCAAGATATGTTGTTGAGAGAATGGATGGTGATTTGTGGGCTAAAGTTCTTACACCTGATAATGACTATAGAAGGCAACTTATTGATCAGGTTGTATCAACTGCTTTGCCTGAAAGCTCGAGCCCAGAACAAGTTTCTGCAGCTGTTAAGGCTTTCATGACAGCTGATCTGCCTCATGAATTGATTGAACTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGTGGGAACTTCAATTTGCAGAATCTTCTTATTTTGACAGCAATAAAGGCTGACCCATCCAGAGTTATGGATTATATCAATAGACTGGATAATTTTGATGGGCCTGCAGTCGGAGAAATGGCTGTAGAAGCTCAGTTATATGAGGAAGCATTTGCAATTTTTAAAAAGTTCAACTTGAATGTTCAAGCAGTTGATGTGTTGCTTGATAATATTCATAGCATTGATAGAGCCGTCGAGTTTGCTTTCAGAGTTGAAGAAGATGCTGTTTGGAGCCAGGTGGCCAAGGCTCAACTCAGGGAAGGGCTTGTAAGTGATGCAATTGAGTCATTTATACGAGCAGAGGATGCTACACAATTTTTGGATGTTATCCGTGCTGCTGAAAATGCCAATGTTTATCATGACCTGGTGAAATACTTGCTAATGGTAAGACAGAAGGCAAAAGAACCCAAGGTCGACAGTGAGCTCATTTATGCATATGCAAAGATTGATAGGCTCAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTTGCTAATCTTCAAAATGTCGGTGACCGGTTGTATGATGAAGCATTATATGAGGCTGCAAAAATCATTTTTGCTTTTATATCTAACTGGGCCAAGTTGGCTATCACACTGGTCAAGTTAAAACAGTTCCAAGGTGCTGTTGATGCAGCAAGGAAAGCCAACAGCTCAAAAACATGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCAGAGGAGTTTCGTTTGGCCCAGATATGTGGACTTAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGTTAATATCTCTCATGGAAAGTGGTTTAGGATTAGAACGGGCTCATATGGGCATCTTTACCGAGTTAGGAGTTCTGTATGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCTACCCGTCTCAATATTCCAAAACTCATAAGAGCTTGTAATGAACAACAGCATTGGAAAGAATTGACCTATTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTATTGTCAAAGTTGCTAATGTTGAGTTGTATTACAAGGCCGTTCACTTCTATTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAATGTCCTTGCACTTCGCGTGGACCATGCACGTGTTGTTGACATCATGCGAAAGGCTGGTCACCTCCGTCTTGTGAAGCCATACATGGTTGCAGTTCAGAGCAACAACGTATCTGCTGTTAATGAAGCCTTGAATGAGATATATGTTGAGGAGGAAGATTATGATAGATTGCGTGAGTCAATTGATTTGCATGATAACTTTGATCAAATAGGCCTTGCACAAAAGATTGAAAAGCATGAGCTTCTTGAGATGAGGCGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGGTGGAAGCAGTCCATTGCTTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGCGAGCGTGAACTTGCCGAGGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCCTCATGTCTATTTGTTTGCTACGATTTAATACGGGCGGATATTGTTCTTGAACTAGCTTGGATGCACAATATGATTGACTTCGCCTTCCCATATCTCTTGCAGTTTATCCGTGAATACACTGGCAAAGTTGATGAACTGGTGAAGGACAAAATTGAAGCACAACACGAAGTGAAGGCTAAAGAGAAAGAAGAAAAGGAAGTAGTTGCACAACAGAACATGTATGCTCAGTTGTTGCCTCTTGCATTGCCTTCGCCGCCAATGCCTGGAATGAGAGGAGCAGGAATGGGAGGAAACTTTGCTCCTTCCCCTCCAATGAGTGGACTGGGGATGCCCCCAATGCCTCCTTTTGGCATGCCACCCATGGGTAGCGGTTACTAA 4377 0.4199 MDKGKPSFTKKQADLFFPPDFADDFPVAMQISHKYNLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVSLAKRGNLPGAEKLVVERFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILGNGMFSHYDRPRVAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQPLVEFFGTLSREWALECMKDLLLANLRGNLQIIVQVAKEYCEQLGVDSCIKIFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLSQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWAKVLTPDNDYRRQLIDQVVSTALPESSSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVDVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRAEDATQFLDVIRAAENANVYHDLVKYLLMVRQKAKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEALYEAAKIIFAFISNWAKLAITLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACNEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIVKVANVELYYKAVHFYLEEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADIVLELAWMHNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQHEVKAKEKEEKEVVAQQNMYAQLLPLALPSPPMPGMRGAGMGGNFAPSPPMSGLGMPPMPPFGMPPMGSGY. 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00884 1458 SUPERFAMILY ARM repeat 653 818 IPR016024 -
Seca8g00884 1458 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 745 890 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 SUPERFAMILY Clathrin heavy-chain terminal domain 3 95 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Seca8g00884 1458 Gene3D - 98 259 IPR012331 -
Seca8g00884 1458 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1040 1186 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 Gene3D - 1294 1390 - -
Seca8g00884 1458 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 303 449 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 894 1035 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 Gene3D Tetratricopeptide repeat domain 809 948 IPR011990 GO:0005515
Seca8g00884 1458 Gene3D Tetratricopeptide repeat domain 655 808 IPR011990 GO:0005515
Seca8g00884 1458 Gene3D Tetratricopeptide repeat domain 949 1288 IPR011990 GO:0005515
Seca8g00884 1458 Pfam Region in Clathrin and VPS 453 592 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 Pfam Region in Clathrin and VPS 897 1033 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 Pfam Region in Clathrin and VPS 307 442 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 Pfam Region in Clathrin and VPS 1044 1183 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 Pfam Region in Clathrin and VPS 602 735 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 Pfam Region in Clathrin and VPS 1192 1331 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 Pfam Region in Clathrin and VPS 745 883 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 SUPERFAMILY ARM repeat 948 1283 IPR016024 -
Seca8g00884 1458 FunFam Clathrin heavy chain 806 948 - -
Seca8g00884 1458 Coils Coil 1369 1396 - -
Seca8g00884 1458 SMART CLH_2 745 890 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 SMART CLH_2 1189 1348 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 SMART CLH_2 303 445 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 SMART CLH_2 1040 1186 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 SMART CLH_2 599 738 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 SMART CLH_2 452 594 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 SMART CLH_2 894 1035 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 FunFam Clathrin heavy chain 654 805 - -
Seca8g00884 1458 FunFam Clathrin heavy chain 949 1288 - -
Seca8g00884 1458 SUPERFAMILY ARM repeat 804 947 IPR016024 -
Seca8g00884 1458 Pfam Clathrin-H-link 121 186 - -
Seca8g00884 1458 Pfam Clathrin, heavy-chain linker 96 119 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Seca8g00884 1458 SUPERFAMILY ARM repeat 97 252 IPR016024 -
Seca8g00884 1458 PIRSF CHC 1 1439 IPR016341 GO:0016192|GO:0032051|GO:0071439
Seca8g00884 1458 Coils Coil 1229 1249 - -
Seca8g00884 1458 FunFam Clathrin heavy chain 211 539 - -
Seca8g00884 1458 FunFam Clathrin heavy chain 1294 1390 - -
Seca8g00884 1458 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1189 1332 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 599 738 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 452 594 IPR000547 GO:0006886|GO:0016192
Seca8g00884 1458 SUPERFAMILY ARM repeat 209 545 IPR016024 -
Seca8g00884 1458 PANTHER CLATHRIN HEAVY CHAIN RELATED 3 1250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00884 Seca-Chr8 11725472 11738774 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00884 K04646 - gmx:100786617 2697.54