Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00871 ATGGCAAACACTGAAGAACCATCTACTTCCAACCCTAACAGTAGCTCTCAACACTCCACCAATGGCGATGCACAACACCACGCCGACGATGAAGAAATTGACGAAGAAGAAGAAGATGAAGACGTCGTGGAGGAACCGAATCGGCAAATTCCCCAATCCGCAGTGTCCAAGTTGCGGGAGCAGCGTTTCAAGGTGGAAGCTCTGTCCCGGCGATTGTCGTCGGAGCTTGTCCCTATCAGAGTCCACGACGTGCTGATAAACGGCAACACAAAGACCAAGGATTGGGTGATTGAGGCTGAGCTCAAAGGGATTGAAAAAGCCACCACCATGCAAGAGGTCATGCAAGCTTCTCAAATCGCCATTTCCAGGCTTCAGGGGCTCGAAATCTTCGATTCCTGCAAGGTTAGGCTCGAGGCTGGACCCCGAGAGCTGCCAAACACTGCCAATGTCATCGTCGACGTAGTTGAGACCGATAACAAACTTTCCGGCGAATGCGGCGTTTATATGAAACCCTCGGCTAGTTCTTGGACTGCTGAAGGTACTCTTAAGTATAAGAACTTGTTGGGGTATGGTGATCTATGGGATGCTTCTTTGGCCTATGGTGCCAATCAAGCAACAGAGGTAAGTGTAGGGGTGTATGCCCCACGACTTAAAGGATTGTTAACTCCTATTGTGGCGCGAATGTTCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCCTACAAAGAGCAGTTGCTGGGCACATCTCTTGGCTTGATATCGACAAAGCACCATGACTTGGTATACACTCTTGGATGGCGTACCTTAACAGATCCCTCACAAAAGTCATCCAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTACTGTCATCTTTGAAATATACATTTAAAATTGATAGGAGAAACTCACCTATTAGGCCAACAAAAGGATATGCTTTTCTTTCCACTACTCACTTTGGTGGCCTTACACCAGATCACCGGGCCTTGCGGTTTCTGCGCCAGGAGTTTGATGTTCGCTTTGCTGTCCCATTTGGGTTTTATAATACAGCACTGAACCTTGGTGTATCTGCTGGTGCTGTTTTTCCATGGGGGCATGGTTACATGACCAAGACATCTCCCCTTCCAGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTAGGAGGACCAACAACATTATGGGGATTTAAAACTAGGGGAGTAGGTCCTACTGAACCACGGAGGCAAAGTAGAGATGGATCTAATGATGACAATAGTGATTCCTCTGGATGGGACTGCATTGGAGGAGATCTTGCTGTTACTGCTTTTGCAGACCTCTCTTTTGATCTTCCTATTAGGTGGTTGAGAGAACATGGAATCCATGGGCATGTTTTTGCTGGTTCTGGGAATACTGCTGAATTAACTCAGAATGAATATAGGCACTTCTCTCCTCGGAAATTCTTAGAATCCTTCCGAATGTCAGTGGGGTGTGGAATTGTTATCCCTACTAGACTCTTCCGCCTAGAGGGTAACTACTTCTACGTACTCAGGAAGGATGAGCATGATCGTGGGAAGACTGGGTTTAGGTTCAGCTTCTCAGCTCCTTCGTAG 1599 0.4715 MANTEEPSTSNPNSSSQHSTNGDAQHHADDEEIDEEEEDEDVVEEPNRQIPQSAVSKLREQRFKVEALSRRLSSELVPIRVHDVLINGNTKTKDWVIEAELKGIEKATTMQEVMQASQIAISRLQGLEIFDSCKVRLEAGPRELPNTANVIVDVVETDNKLSGECGVYMKPSASSWTAEGTLKYKNLLGYGDLWDASLAYGANQATEVSVGVYAPRLKGLLTPIVARMFMLSQDWQEFSSYKEQLLGTSLGLISTKHHDLVYTLGWRTLTDPSQKSSRSIRRQLGHGLLSSLKYTFKIDRRNSPIRPTKGYAFLSTTHFGGLTPDHRALRFLRQEFDVRFAVPFGFYNTALNLGVSAGAVFPWGHGYMTKTSPLPERFYLGGDFSPVCTLGGPTTLWGFKTRGVGPTEPRRQSRDGSNDDNSDSSGWDCIGGDLAVTAFADLSFDLPIRWLREHGIHGHVFAGSGNTAELTQNEYRHFSPRKFLESFRMSVGCGIVIPTRLFRLEGNYFYVLRKDEHDRGKTGFRFSFSAPS. 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00871 532 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 31 529 IPR039910 -
Seca8g00871 532 MobiDBLite consensus disorder prediction 29 44 - -
Seca8g00871 532 MobiDBLite consensus disorder prediction 399 425 - -
Seca8g00871 532 FunFam Outer membrane OMP85 family protein 78 157 - -
Seca8g00871 532 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g00871 532 Pfam Omp85 superfamily domain 186 529 IPR000184 GO:0019867
Seca8g00871 532 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 171 530 - -
Seca8g00871 532 Gene3D membrane protein fhac 78 157 - -
Seca8g00871 532 MobiDBLite consensus disorder prediction 1 55 - -
Seca8g00871 532 FunFam Outer membrane OMP85 family protein 168 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00871 Seca-Chr8 11540859 11545422 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00871 K07277 - gmx:100802876 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00871 8 11540859 11545422 Seca8g00871 8 11540859 11545422 ECH
Seca8g00871 8 11540859 11545422 Seca6g02062 6 80078731 80083598 PCT