Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00736 ATGTCTGGTGATGGTGACAACATATTGGCATACATTGCACCAGATGAAGTAAGAGACTATCTAGAAGAGTACACATGGGATGGTAAATGGGACAAGGTAATAGAAATGTATTACATATTTCCAGAGTCCCACATCGCCCAAATCTCGGATGCGGAAGAAACCGCATTGCATGTGGCAGTGGATTTCGGTGAAGAATACGTGGTGAAGGAGCTTGTGAATGCAATGATCACACTTGGAGCAAGGCAAGAATTAGAAACGGCACAACAACAGGGGAAACAGAGGATTAAGGGTCTTGAGATGAAGAATGAGAGAGGAGATACACCTTTGCACCTTGCAGCATCTAGAGGGTTTGCTAGAATGTGCAAATGCATAATAGGAAGTAATAATGAGAGGATATATTTGCTTAGTCTTAAAAATGAAGATGGAGAGACACCTCTGTTTCAAGCAGCTATCAATTGGAGGAAACAAGCGTTTGCGTACTTAGCTTATATTTCTAAAGAGAGGGTCACTTTGCAAGATCTTGTTAGAGATGTGGATGGTGATAGTATTCTTCATTCTGCTATCAGGAGAGAATATTTTGATTTGGCAGTGATAATAGCTTATCATTATGATTTCCTGAGCACACATCTGAATAAAGAGGAAGCGACTCCTCTCAAAATCCTTGCCACTAGGCCCTCTGCATTCATGAGTGCCACCACCCTTTCATGGTGGAAGCAAATCCTCTACCATTGTATAATTGTGGAACCACTGGATGCTGAAAGAGCAATGAAGTCGAATTTGGGAAAGATGGAGCAGTCTTCATATTCTGAAGTCAAGTTCCCACAGAACTACAACACATTATATGACGTCGTTTCTACATGGTTAAAATTTGCCACTCCATTCGGCATAAAGGCTTCGAGAAAGAAGAAGCATGACACAGAAAACCCATTAAACAATTATAAACAGAACAACAGTGCAAATGGAGGTGGTCAGTTTATATCAGAGAAATATGTGGATGGATTTTTGCCACCAAATTATGAAACAGTTCATCAATTTGTCAAGTCTGCATATGTACATAGTCTCGGCCTTTCAGGAGTGGAGTTAAAGGATGTAAAGATGACAAAGAAGAAGCACCAATGGAGTGGTCAACTGTTGAAGGCACTAATGAAAAGACCTTATGAAGCATTCACTGGAAGCGGGGCTCGACCAACTGATATGGAAGTTGATGCAGATATGTATAATGTCTACTGCCAATGGAAGCAAGGTATGTTTGATTTGGCAGAGAGAGGTGAAGAAGAAGAAGGAATAAAAAGAGACAAAGAGGAAACTTCAACTCAAAATGAGACAAAGAAAGGAACCGAAGGTGTAGATGGAAAGGGAATTGACAAAAAGGAGACAGCATTTTTGGTTGCAGCAAGAAATGGCATAGTTGAAATGGTGAACGAAATTCTATCTAGAATACCAAGTGCCATTCATAATACTAACTCAAACAGAGAAAATGTATTGCTAGTTGCAGTGAAGAGCAGACAACCCCTTATTATTGAGACTTTGAGAACCAGAAGGCATTCAAAACCAGAAGTTTGGAATAACTTGCTTCTCTCAGTGGATAATAAGGAAAACACTGTCTTGCACTTGGCTGCTGAGGCACTAGGTGGTGATAAGCCTTGGCAGATTGCTGGCTCTGCCTTACAAATGATGTGGGATATAAAGTGGTTTCAGTATGTTAAAAGCCTTGTACCACAACACTTCTATTTTAGAAGCAACGATGATGGCAAAACTGCAGGGGACATCTTCAAGATCACACATGAAAGTCTTATAAAAGAGAGTTGTGAGTGGCTCAAGGACACATCTGAATCTTGCTCTGTGGTGGCTGCACTTGTTGCTGGTGTTTCCTTTACCACAGCAAACTCTGTACCTGGTAGTACCAATGATGATGGTAGACCAATTTTAGAAGGAGAGCCTGCATTCAATGTATTTGCCATTGCTTCATTGGTTGGACTGTGCTTCTCTGTCACAGGACTCATAATGTTCCTTGCTATTCTCACTTCAAGAAAACAAGCCAAAGATTTTCGGAGAGACTTGCCACTCAAACTTCTTCTTGGCTTGAGTTCTCTCTTTGTGTCCATTGCTGCAATGTTTGTTTCTTTCTGCAGTGGCCATTATTTTCTGCTCAGTCACAAATACAATTCCATCATTTTCCCTGTTTATGCAGCCACTTGTTTGCCTGTGACTTTCTATGCTGTGGCACAGTTTCCATTATACTTTGATCTTCTCACGGCTATTTTAACTAAGGTGCCAATGGCAAGTGACCAAGGTGACAATTTGTAG 2307 0.4083 MSGDGDNILAYIAPDEVRDYLEEYTWDGKWDKVIEMYYIFPESHIAQISDAEETALHVAVDFGEEYVVKELVNAMITLGARQELETAQQQGKQRIKGLEMKNERGDTPLHLAASRGFARMCKCIIGSNNERIYLLSLKNEDGETPLFQAAINWRKQAFAYLAYISKERVTLQDLVRDVDGDSILHSAIRREYFDLAVIIAYHYDFLSTHLNKEEATPLKILATRPSAFMSATTLSWWKQILYHCIIVEPLDAERAMKSNLGKMEQSSYSEVKFPQNYNTLYDVVSTWLKFATPFGIKASRKKKHDTENPLNNYKQNNSANGGGQFISEKYVDGFLPPNYETVHQFVKSAYVHSLGLSGVELKDVKMTKKKHQWSGQLLKALMKRPYEAFTGSGARPTDMEVDADMYNVYCQWKQGMFDLAERGEEEEGIKRDKEETSTQNETKKGTEGVDGKGIDKKETAFLVAARNGIVEMVNEILSRIPSAIHNTNSNRENVLLVAVKSRQPLIIETLRTRRHSKPEVWNNLLLSVDNKENTVLHLAAEALGGDKPWQIAGSALQMMWDIKWFQYVKSLVPQHFYFRSNDDGKTAGDIFKITHESLIKESCEWLKDTSESCSVVAALVAGVSFTTANSVPGSTNDDGRPILEGEPAFNVFAIASLVGLCFSVTGLIMFLAILTSRKQAKDFRRDLPLKLLLGLSSLFVSIAAMFVSFCSGHYFLLSHKYNSIIFPVYAATCLPVTFYAVAQFPLYFDLLTAILTKVPMASDQGDNL. 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00736 768 Coils Coil 81 101 - -
Seca8g00736 768 Gene3D - 417 588 IPR036770 -
Seca8g00736 768 SUPERFAMILY Ankyrin repeat 28 222 IPR036770 -
Seca8g00736 768 Pfam Ankyrin repeats (3 copies) 56 163 IPR002110 GO:0005515
Seca8g00736 768 SMART ANK_2a 51 80 IPR002110 GO:0005515
Seca8g00736 768 SMART ANK_2a 456 486 IPR002110 GO:0005515
Seca8g00736 768 SMART ANK_2a 179 210 IPR002110 GO:0005515
Seca8g00736 768 SMART ANK_2a 104 134 IPR002110 GO:0005515
Seca8g00736 768 Gene3D - 42 235 IPR036770 -
Seca8g00736 768 PANTHER CASKIN 51 753 - -
Seca8g00736 768 Pfam Domain of unknown function 604 715 IPR026961 -
Seca8g00736 768 MobiDBLite consensus disorder prediction 423 451 - -
Seca8g00736 768 SUPERFAMILY Ankyrin repeat 457 541 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00736 Seca-Chr8 9387462 9393275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00736 458 720 Miscellaneous Gene Families AT3G12360 22.222 2.08e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00736 - - psat:127118019 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00736 8 9387462 9393275 Seca8g00736 8 9387462 9393275 ECH