Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00317 ATGACGGTTGCTGGCCGCCGCTGTGTAACAACACTCACATTTTATTACTGCATATTGTTTTTGTTTACTGTAGGATATTTAATGTGCATCTTTGAAGAAAAACTTGAAGAAACCACTCTGGAGAAACTTGTAGATTGGGAATATACATTTTGTGATGCAGATGGAGAGACAAAAAGATACTTCTATCGTACGCCAAAGACACGAGAATTGGACATGCTTCTAGGAGATATCTACCACAAAATACTAGATATGGAGAGGGCGATCACCAGAGACTTGTTTTCCCGTGTACTATTGTTCTCAACCCATTTGATAAAGGTGGCAACTTTTGCAGCTGAACTGGACTGCTTTTTGTCAATGGCATTGGTTGCTCGGCAGAACAATTATGTCAGGCCTTTGTTGACTGAAGAAAACTTGCTCGATATTAAAAATGGAAGGCATGTTTTGCAGGAAATGACTGTAGACACATTTATTCCTAATGACACTAAGGTTTTTCATGATGGAAGAATTAATATTATCACTGGTCCTAATTTTTCTGGGAAGAGCATCTATATAAAACAGGTGGCTTTAATTGTTTTCCTCTCCCACATCGGTAGTTTTGTGCCAGCTGATGCAGCAACCGTGGGTCTGACAGATAGAATATTTTGTGCAACGGGAAGCAGGCTTATGACAGCAGAACAATCAACATTTATGATTGATCTACATCAAATAGGGATGATGCTCAGGCATGCTACTTCACGATCTCTGTGTCTGGTGGATGAATTTGGTAAAGGTACTCTGACAGAAGACGGCATTGGTCTGCTTGCTGGGACCATAAATCACTTTGTCGCGTGTGATGAACCTCCAAAGGTTTTTGTATGCACTCATCTCATGGATTTATTGCATGGGCATTCCTTGACCAAGTCTGAGCAGATCAAGTTTTATACAATGAGTATACTGAGGCCTGAGGACAATTCGACACAAATCGAAGACATTGTATTTTTATATAGGCTTGTCCCTGGGCGTGCGCATCATAGCTACGGACTGCACTGTGCTCTGCTTGCAGGTGTGCCAGACGAAATTATAGAAAGGGCAGCAGTTGTGTTGGATGCTATTTCAAATAACGATTGTGTTGAGCGATTATGCAATGAGAACATCTCAGCTCAAGATGACCAATACAAGGGTGCCATGAAGAAATTGTTGGAATTCGATATTGGCAAAGGCGACTTAAACCTTTTTTTCGAGGATATATTTTCTCTAGTTCCTAATGCATCATGA 1254 0.4075 MTVAGRRCVTTLTFYYCILFLFTVGYLMCIFEEKLEETTLEKLVDWEYTFCDADGETKRYFYRTPKTRELDMLLGDIYHKILDMERAITRDLFSRVLLFSTHLIKVATFAAELDCFLSMALVARQNNYVRPLLTEENLLDIKNGRHVLQEMTVDTFIPNDTKVFHDGRINIITGPNFSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGTINHFVACDEPPKVFVCTHLMDLLHGHSLTKSEQIKFYTMSILRPEDNSTQIEDIVFLYRLVPGRAHHSYGLHCALLAGVPDEIIERAAVVLDAISNNDCVERLCNENISAQDDQYKGAMKKLLEFDIGKGDLNLFFEDIFSLVPNAS. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00317 417 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 51 377 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Seca8g00317 417 ProSitePatterns DNA mismatch repair proteins mutS family signature. 247 263 IPR000432 GO:0005524|GO:0006298|GO:0030983
Seca8g00317 417 Pfam MutS domain V 171 363 IPR000432 GO:0005524|GO:0006298|GO:0030983
Seca8g00317 417 CDD ABC_MSH5_euk 140 349 - -
Seca8g00317 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 365 IPR027417 -
Seca8g00317 417 SUPERFAMILY DNA repair protein MutS, domain III 53 127 IPR036187 -
Seca8g00317 417 Gene3D - 128 397 IPR027417 -
Seca8g00317 417 SMART mutATP5 167 362 IPR000432 GO:0005524|GO:0006298|GO:0030983
Seca8g00317 417 FunFam DNA mismatch repair protein MSH5 129 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00317 Seca-Chr8 3741850 3749698 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00317 K08741 - gmx:100797567 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00317 8 3741850 3749698 Seca8g00317 8 3741850 3749698 ECH