Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00279 ATGGCCATGGAGCTCTGTACTCGAACCTTCACAAGTGTCCCCCTTTTCAACCCTTCTCTGTCTCTCCCCTCTTCTAACTCTAACTCTCTTCTTCTTCGTGCCAACACTAGAAGACCCTTCAATTTCAATTCCTTAAAGCTCTCTTCTTTTACCCCTCACATTCACCTCTTTCAACCCTTTCTCTATCATCACACTTCTTATCCCTTCACAGTCTCAGCTTCTTCTTCTTCTTCTTCAGCCACAGTTGACACTGAAAAGGACCGTCTTCCAGCAGAATTGAAGGTCACCGAAACAGAGGAACCCAATTCCAGAGTTAGATTGCATGTGGAGGTGCCACCACTGGTATGTGAGGAATGTTACAAAACGGTCATAGCTGAGTTTATGAAGCATGCAAAGATCCCTGGATTTCGCCCTGGAAAGAAGGTTCCAGAAAGTATTCTTGTTGGTTATGTTGGAAGTAAAAATGTTCAGAAGGCTACGATTGAATCTGTACTGAGGAGAACACTTTCACACGCTATGGCATCAGTTACTGGAAGGGCTTTGCAGGACTCAGTACGTATAGTGACTAAATTTGCTGACATGGAGGAGACATATTCTTCTCTCGGGTCTCTTAGATATGATGTCATTGTTGATGTTGCACCAGAAATCAAATGGATTTCTGATAATGCATACAAAAATATGAAGATTGTTGTTGAGATAGACAGCGATATAGATGCTCACAAAGCATCTGAACAAGAATTTAGAAGGCGTTACAAATCTATTGGTGCACTGAAAGTTGTTACTGACAGAGGGCTACAGGTTGGTGATGTTGCTGTCCTTGACATCTCAGCAACAACCATTGATCAAGATGAATCAAATATTAAGAATATTCCTTCTGCTGAAAGTAAAGGGTTTAATTTTGATACAGAAGATGGTCACATATTATTACCGGGTTTCCTTGATTCTATAATTGGAATTGGTCGAGGGGAAACTAAGTCATTTCCTCTTGTATTTCCTGAAACCTGGAAGCAAGAAAATCTTCGTGGTGTTCATGCTCAGTTTACTGTTGAGTGCAAAGAACTTTTTTACCGAGATTTACCAGAGCTGGATGACTCTATTGCTGACAAGCTTCTCCCTGGATGCACCACAGTGGAGCAGGTCAAAGACTTATTGTTACAGAGATGCCAAGAGGTGGAGCAAACAGCTAGAGAACAAGCAACTGATAATGCTATCTTAGATCAGCTTTCTAAGATGGTAGAAGTTGATATACCTCAATCCTTGTTTGAGGAACAAGGTAGGCAGCTTTATGGAGCCAACCTTTTAGAAATACAGGCAAAAGTAAAACTAAATGAGCAGCAGCTGGCGTCTCTATCAAGTCCAAAGGCTGTGAATGAATATCTTGAGCATCAGAAGGAAAATATAACAAATTTGATAAAACAGAATCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGCTTTCTACTGAAGACATTCTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAATCAGGAATATGATGAGCAACGGGTGAAGGAACAGGTTCAAGAAATACTAGAAGGAGCTAAGGTGCTTGAATGGTTGAGAGAACATGCAGAGGTTCAGTATATAACCAAATGA 1635 0.4073 MAMELCTRTFTSVPLFNPSLSLPSSNSNSLLLRANTRRPFNFNSLKLSSFTPHIHLFQPFLYHHTSYPFTVSASSSSSSATVDTEKDRLPAELKVTETEEPNSRVRLHVEVPPLVCEECYKTVIAEFMKHAKIPGFRPGKKVPESILVGYVGSKNVQKATIESVLRRTLSHAMASVTGRALQDSVRIVTKFADMEETYSSLGSLRYDVIVDVAPEIKWISDNAYKNMKIVVEIDSDIDAHKASEQEFRRRYKSIGALKVVTDRGLQVGDVAVLDISATTIDQDESNIKNIPSAESKGFNFDTEDGHILLPGFLDSIIGIGRGETKSFPLVFPETWKQENLRGVHAQFTVECKELFYRDLPELDDSIADKLLPGCTTVEQVKDLLLQRCQEVEQTAREQATDNAILDQLSKMVEVDIPQSLFEEQGRQLYGANLLEIQAKVKLNEQQLASLSSPKAVNEYLEHQKENITNLIKQNLAVGDIYRRENLQLSTEDILKEVENSIAEFKRQNQEYDEQRVKEQVQEILEGAKVLEWLREHAEVQYITK. 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00279 544 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 65 526 IPR005215 GO:0015031
Seca8g00279 544 Pfam Bacterial trigger factor protein (TF) 94 232 IPR008881 GO:0006457|GO:0015031
Seca8g00279 544 Gene3D - 91 216 IPR036611 GO:0006457|GO:0015031
Seca8g00279 544 Coils Coil 494 521 - -
Seca8g00279 544 FunFam Trigger factor 93 216 - -
Seca8g00279 544 SUPERFAMILY FKBP-like 258 363 - -
Seca8g00279 544 Gene3D - 253 360 IPR046357 GO:0003755
Seca8g00279 544 Hamap Trigger factor [tig]. 93 540 IPR005215 GO:0015031
Seca8g00279 544 FunFam Chloroplast trigger factor 333 539 - -
Seca8g00279 544 SUPERFAMILY Trigger factor ribosome-binding domain 93 228 IPR036611 GO:0006457|GO:0015031
Seca8g00279 544 FunFam Trigger factor 258 360 - -
Seca8g00279 544 Gene3D - 227 539 IPR037041 GO:0006457|GO:0015031
Seca8g00279 544 NCBIfam trigger factor 104 533 IPR005215 GO:0015031
Seca8g00279 544 Pfam Bacterial trigger factor protein (TF) C-terminus 376 533 IPR008880 GO:0006457|GO:0015031
Seca8g00279 544 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 362 541 IPR027304 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00279 Seca-Chr8 3360178 3366378 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00279 K03545 - gmx:100812597 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00279 8 3360178 3366378 Seca8g00279 8 3360178 3366378 ECH