Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00205 ATGGATCAAATTTGTTTCTGCAATAGGTTAGTTATGGGCTGGATAAGATTCTTTGAAGGAAAAAGGGTATATGACTGCATTAATTCTCCCAACACTGCTCACCCTGTTCCTGTTCTTGTTGAAGAAGTTAAAGATATTGTAAGTGTTGCTCGTTACATATTAGTTGTCGAGAAAGAATCAGTTTTCCAAAGACTAGCAAACGACCAGTTCTGCAATGCAAATCATTGCATCGTCATCACTGGAAGAGGCTACCCTGATATTCCTACAAGAAGGTTCTTGCGGCTTCTGGTTGAGAATTTGCACCTACCTGCTTATTGCTTGGTAGATTGTGATCCCTATGGCTTTGACATCTTAACCACATATAGATTTGGTTCTATGCAAATGGCTTACGACACGAAACATCTTCGTGTCCCAGAGATACAGTGGCTTGGAGCTTTTCCTTCAGATTCTGAGAGATATTTAGTTCCAAAGCAGTGCCTCCTTCCTCTGACTGCTGAAGACAAGAGGAAAATTAAAGCCATGTTGCTTAGATGCTACCTGCAGAGGGAGGTGCCACAATGGAGGTTGGAGCTAAAGCTGATGCTGCAAAAAGGAGTAAAGTTTGAGATTGAAGCGTTATCTGTGCACACACTTTCGTTCTTGTCAGAGTCTTACATACCATCTAAAATTCAAACTAAGTGA 681 0.4112 MDQICFCNRLVMGWIRFFEGKRVYDCINSPNTAHPVPVLVEEVKDIVSVARYILVVEKESVFQRLANDQFCNANHCIVITGRGYPDIPTRRFLRLLVENLHLPAYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLRVPEIQWLGAFPSDSERYLVPKQCLLPLTAEDKRKIKAMLLRCYLQREVPQWRLELKLMLQKGVKFEIEALSVHTLSFLSESYIPSKIQTK. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00205 226 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 10 225 IPR002815 GO:0003677|GO:0003918|GO:0005694
Seca8g00205 226 CDD TOPRIM_TopoIIB_SPO 51 213 IPR034136 -
Seca8g00205 226 FunFam DNA topoisomerase 6 subunit A 7 226 - -
Seca8g00205 226 PRINTS SPO11 homologue signature 149 173 IPR013048 GO:0003677|GO:0003918|GO:0042138
Seca8g00205 226 PRINTS SPO11 homologue signature 114 133 IPR013048 GO:0003677|GO:0003918|GO:0042138
Seca8g00205 226 PRINTS SPO11 homologue signature 210 226 IPR013048 GO:0003677|GO:0003918|GO:0042138
Seca8g00205 226 PRINTS SPO11 homologue signature 67 82 IPR013048 GO:0003677|GO:0003918|GO:0042138
Seca8g00205 226 SUPERFAMILY DNA topoisomerase IV, alpha subunit 11 224 IPR036078 GO:0003677|GO:0005694
Seca8g00205 226 Gene3D - 9 226 - -
Seca8g00205 226 PRINTS DNA topoisomerase VI subunit A family signature 53 70 IPR002815 GO:0003677|GO:0003918|GO:0005694
Seca8g00205 226 PRINTS DNA topoisomerase VI subunit A family signature 77 98 IPR002815 GO:0003677|GO:0003918|GO:0005694
Seca8g00205 226 PRINTS DNA topoisomerase VI subunit A family signature 109 125 IPR002815 GO:0003677|GO:0003918|GO:0005694
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00205 Seca-Chr8 2528350 2531945 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00205 K10878 - gmx:100813920 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00205 8 2528350 2531945 Seca8g00205 8 2528350 2531945 ECH