Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00200 ATGGCGCCTGTGGCAGCTAGAAGCGCAGGCGCTGTTGGAGCCATAATGGTGTCGCTGGTCGTCGCCTATTTCCTCTGCGACCGTCGCTGCAATTCTTCAAAGAAGAAATCAAAGAAGGGAATCCTTCACGCCATTGGTAACACTCCTTTGATTCGAATCAACAGCCTTTCCGACGCCACTGGTTGCGAAATTCTTGGCAAGTGCGAGTTTTTGAACCCTGGAGGAAGTGTCAAAGATCGCGTTGCAGTTAAAATCATTGAAGAGGCTTTGGAATCTGGACAGCTACGTCCAGGTGGAATAGTTACTGAAGGAAGTGCTGGAAGCACTGCTATTAGCATTGCCACTGTTGCTCCTGCCTTTGGATGCAAAAGCCACGTGGTTATTCCAGATGATGCTGCCATTGAGAAGTCTCAAATAATTGAAGCCCTTGGGGCAACTGTTGAAAGAGTACGGCCAGTGTCGATTACTCACAAAGACCATTTTGTCAATATTGCTCGAAGACGCGCATCTGAAGCAAATGAGTTTGCATTGAAGAATAGAAATTCACAATTGAATGGCAAGGACTCAGAGCAAATAAATGGTTATAAATCCGATGGATACAATCACAGCTCACTCTTTCCTATTGATTGTCAAGGTGGATTTTTTGCTGATCAGTTTGAGAACTTAGCCAACTTCAGGGCCCATTATGAGGGTACAGGGCCTGAGATTTGGGAACAGACGAATGGAAAATTAGATGCATTTGTTGCAGCAGCAGGCACTGGTGGTACTGTGGCCGGTATATCCAAGTTTCTTCAGGAAAAGAATCCGAACATCAAGTGCTTCCTCGTAGATCCTCCTGGTTCTGGCTTGTTTAATAAGGTAACAAGGGGAGTGATGTACACCAAAGAGGAGGCAGAGGGACGTAGGCTTAAGAATCCATTTGACACTATAACAGAAGGAATTGGGATTAACAGGATAACAAGGAATTTTGCAAAGGCCAAACTTGATGGGGCCTTTAGAGGCACAGATATAGAAGCTGTTGAAATGGCCAGGTTTCTCGTAAAGAACGATGGGCTCTTCCTTGGGAGTTCTTCTGCTATGAATTGTGTTGGAGCAGTTAGAGTAGCACAGGCAATTGGCCCTGGCCACACAATTGTAACCATTCTCTGCGACAGTGGAATGAGACATTTGAGCAAGTTTTATAATGCTGAATACTTGTCTCAGCTTGGTTTGACACCAAAAGCAACTGGATTAGAGTTCTTGGGTATCAAATGA 1254 0.4498 MAPVAARSAGAVGAIMVSLVVAYFLCDRRCNSSKKKSKKGILHAIGNTPLIRINSLSDATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLRPGGIVTEGSAGSTAISIATVAPAFGCKSHVVIPDDAAIEKSQIIEALGATVERVRPVSITHKDHFVNIARRRASEANEFALKNRNSQLNGKDSEQINGYKSDGYNHSSLFPIDCQGGFFADQFENLANFRAHYEGTGPEIWEQTNGKLDAFVAAAGTGGTVAGISKFLQEKNPNIKCFLVDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRITRNFAKAKLDGAFRGTDIEAVEMARFLVKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTIVTILCDSGMRHLSKFYNAEYLSQLGLTPKATGLEFLGIK. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00200 417 CDD CBS_like 46 391 - -
Seca8g00200 417 Gene3D - 206 399 IPR036052 -
Seca8g00200 417 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 38 398 IPR036052 -
Seca8g00200 417 FunFam Cysteine synthase, putative 45 74 - -
Seca8g00200 417 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 67 85 IPR001216 GO:0006535
Seca8g00200 417 PANTHER CYSTATHIONINE BETA-SYNTHASE 39 399 - -
Seca8g00200 417 Gene3D - 72 180 IPR036052 -
Seca8g00200 417 FunFam Cysteine synthase 226 390 - -
Seca8g00200 417 Pfam Pyridoxal-phosphate dependent enzyme 43 384 IPR001926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00200 Seca-Chr8 2495679 2498436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00200 43 391 Miscellaneous Gene Families AT3G04940 29.630 1.10e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00200 K01738 - gmx:100799081 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00200 8 2495679 2498436 Seca8g00200 8 2495679 2498436 ECH