Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00188 ATGTGTCACACATTCTCAATTGCAGGTCTTGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACCATCATTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTTTACATGGCCTCTCATTTAAGTGGCCAAGGTATGATATTTGCAATTGATGTAAATCGTGGTAGGTTGAGGATTCTTAAAGAGACAGCAAAGTTGCACCAAGTAGATGGTGTCGTTACTACCATCCATTCAGATCTTCGCTCATTAACTCAGGACAGTGGACCACTTAAAAGTAACAAAGTTTTGTTGGATGCTCCATGCTCTGGACTTGGTGTTCTTTCAAAGAGAGCGGACTTGCGTTGGAACAGGAAGCTGGAGGATATGGAACAGCTGAAGAAATTACAGGATGAGCTCCTGGATGCAGCATCCAAATTGGTAAAACCCGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGATGAGAGGGTAGCTGCTTTTCTTGTAAGACATCCGGATTTTCACATTGATCCTGTAGACAGATATGTTCCACCTGATTTTGTGACACCCAGTGGTTTCTATTTCTCCAACCCAGTAAAACATTCACTGGATGGCTCCTTTGCAGCTCGTTTGGTACGAGCTTTATAA 642 0.433 MCHTFSIAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGMIFAIDVNRGRLRILKETAKLHQVDGVVTTIHSDLRSLTQDSGPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASKLVKPGGVLVYSTCSIDPEENDERVAAFLVRHPDFHIDPVDRYVPPDFVTPSGFYFSNPVKHSLDGSFAARLVRAL. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00188 213 CDD AdoMet_MTases 22 149 - -
Seca8g00188 213 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 9 211 IPR023267 GO:0001510
Seca8g00188 213 FunFam Ribosomal RNA small subunit methyltransferase B 7 212 - -
Seca8g00188 213 Gene3D Vaccinia Virus protein VP39 9 212 IPR029063 -
Seca8g00188 213 PRINTS RNA (C5-cytosine) methyltransferase signature 24 34 IPR023267 GO:0001510
Seca8g00188 213 PRINTS RNA (C5-cytosine) methyltransferase signature 194 211 IPR023267 GO:0001510
Seca8g00188 213 PRINTS RNA (C5-cytosine) methyltransferase signature 93 105 IPR023267 GO:0001510
Seca8g00188 213 PRINTS RNA (C5-cytosine) methyltransferase signature 143 159 IPR023267 GO:0001510
Seca8g00188 213 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 1 212 IPR001678 GO:0008168
Seca8g00188 213 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 8 211 IPR029063 -
Seca8g00188 213 Pfam 16S rRNA methyltransferase RsmB/F 14 209 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00188 Seca-Chr8 2415655 2418678 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00188 K03500 - lja:Lj2g3v3303470.2 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00188 8 2415655 2418678 Seca8g00188 8 2415655 2418678 ECH