Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00140 ATGACTGTGGGGGCAGGAATATCTGTTGCAGATGGTAACTTGATGGTGTTGGGGAAGAAGGTGCTGAGTCATGTTCATGACAATGTTCTTGTTACCCCTGCATCTGGGGGTGCTTTGCTCAATGGTGCATTCCTTGGGGTTGCATCTCATCAGAAGGGTAGCCGCAGACTCTTCCCCATTGGCAAGCTTGAGGGGTTACGGTTTATGTGTGCTTTTAGGTTCAAGATGTGGTGGATGACACAGAGAATGGGCACTTGTGGACAAGAAGTTCCAATAGAGACGCAGTTCTTGCTTATTGAAGCACACAATGGCTCTGATATTGATGGAGGGATCAACAATGGAGAAGACCAAGGTTCTGCTGCTACCTATGCAGTTTTGTTACCTCTTTTGGAAGGAGATTTCAGAGCAGTTCTTCAGGGGAATGATCAAAACGAGATTGAGATCTGTGTGGAAAGTGGTTGTCCTGATGTGGAGGAATTTGATGGGACTCATCTGGTGTTTATTGGAGCTGGATCAGACCCTTATGAAGTCATAACAAATGCTGTCAAGACTGTTGAGAAACACTTGAAGACATTTTCTCATCGTGAGAGAAAGAAGATGCCAGATATATTGAACTGGTTTGGTTGGTGTACATGGGACGCTTTCTATACTAATGTCACTTCAGAGAATGTGAAGGAAGGACTAAAGAGTTTCGAGGAAGGTGGAATTCCTGCTAAGTTTGTTATAATTGATGATGGATGGCAATCTGTTAGCATGGACCCTAATGGTACTGAATGGAAAGCTGATAATGCAGCCAACTTTGCAAATCGCTTAACAAATATCAAAGAGAATCACAAGTTCCAGAAAGATGGCAAGGAAGGTCAGTGGGTAGAGGACCCAGCTATGGGACTTCGTCATATTACCAATGAAATCAAACAAGAGCATGACATAAAGCATGTATATGTGTGGCATGCAATAACAGGATATTGGGGTGGTGTTAAACCTGGTGTTTCTGGCATGGAGCACTATGAGTCAAAAATGGCCTTCCCTGTCTCATCCCCTGGAGTCCAGTCAAATCAACCAGATGAAGCTTTAACAACCATTGCTATCAATGGGCTTGGCCTTGTGAATCCTGAGAAAGTTTTTAACTTTTATGATGAACTCCACTCATATCTGGCTTCTGCTGGTATTGATGGTGTCAAAGTTGATGTTCAGAATATCCTTGAAACTCTTGGGGCAGGACATGGTGGGAGGGTGAAACTTGCAAGGAAATACCACCAGGCATTAGAAGCATCAATCTCTAGGAACTTCCCTGATAATGGAATCATTTGTTGCATGAGTCACAATACAGATGGATTATACAGTTCAAAGAGATCAGCTGTTATTAGGGCATCAGATGATTTCTGGCCAAGAGACCCTGCATCTCACACTATTCACATTGCATCAGTTGCTTACAATACTATTTTCCTTGGTGAATTTATGCAGCCAGATTGGGATATGTTTCATAGCCTACATCCAATGGCTGAATATCATGCTGCTGCAAGAGCAGTAGGAGGCTGTCCTATTTATGTCAGTGACAAGCCTGGACACCATGACTTTAATCTTTTGAAGAAGCTTGCACTTCCTGATGGTTCTATATTAAGGGCTAAACTTCCAGGAAGACCAACAAAGGATTGCTTATTTTCTGATCCTGCTAGAGATGGAAAGAGTCTTCTGAAGATATGGAACATGAATGATTTTTCTGGAGTTGTTGGGGTATTTAACTGCCAAGGAGCTGGGTGGTGCAAAGTTGGAAAGAAGAACCTTATTCATGATGAGAATCCAGGCACAGTCACTGGCATCATTAGGGCTAAAGATGTTGACTATATATCCAGAGTGGCAGATGATAAATGGACAGGAGATGCCATTATATTTTCCCATGTTGGTGGAGAAGTAATCTACCTTCCAAAAGATGTGTCTATGCCAATTACCTTGAAATCCAGAGAATATGAAGTTTTTACAGTAGTCCCTGTGAAGGAATTAACAGATGGTGTTAAATTTGCACCTATTGGTTTAATCAAGATGTTCAATTCAGGAGGGGCTGTCAAAGAGTTAAGTTGTGGATCTAATGGAAGCACAAATGTTACCATGAGAGTCCGCGGGTGTGGCCAGTTTGGTGCTTATTCATCAACTCGGCCTAAATTGGTAACAATTGATTCAGAAGAGGTGAAATTCAGATATGAGGAAGAATTTGGATTGGTGACTATTGATTTGAGAGTACCACAGAAAGAGTTATACCAATGGAGTATTTCTATTGATTTATGA 2283 0.4192 MTVGAGISVADGNLMVLGKKVLSHVHDNVLVTPASGGALLNGAFLGVASHQKGSRRLFPIGKLEGLRFMCAFRFKMWWMTQRMGTCGQEVPIETQFLLIEAHNGSDIDGGINNGEDQGSAATYAVLLPLLEGDFRAVLQGNDQNEIEICVESGCPDVEEFDGTHLVFIGAGSDPYEVITNAVKTVEKHLKTFSHRERKKMPDILNWFGWCTWDAFYTNVTSENVKEGLKSFEEGGIPAKFVIIDDGWQSVSMDPNGTEWKADNAANFANRLTNIKENHKFQKDGKEGQWVEDPAMGLRHITNEIKQEHDIKHVYVWHAITGYWGGVKPGVSGMEHYESKMAFPVSSPGVQSNQPDEALTTIAINGLGLVNPEKVFNFYDELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASISRNFPDNGIICCMSHNTDGLYSSKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCPIYVSDKPGHHDFNLLKKLALPDGSILRAKLPGRPTKDCLFSDPARDGKSLLKIWNMNDFSGVVGVFNCQGAGWCKVGKKNLIHDENPGTVTGIIRAKDVDYISRVADDKWTGDAIIFSHVGGEVIYLPKDVSMPITLKSREYEVFTVVPVKELTDGVKFAPIGLIKMFNSGGAVKELSCGSNGSTNVTMRVRGCGQFGAYSSTRPKLVTIDSEEVKFRYEEEFGLVTIDLRVPQKELYQWSISIDL. 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00140 760 FunFam Probable galactinol--sucrose galactosyltransferase 1 204 531 - -
Seca8g00140 760 Gene3D Aldolase class I 204 533 IPR013785 -
Seca8g00140 760 Pfam Raffinose synthase or seed imbibition protein Sip1 7 743 IPR008811 -
Seca8g00140 760 PANTHER - 1 757 IPR008811 -
Seca8g00140 760 SUPERFAMILY (Trans)glycosidases 201 532 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00140 Seca-Chr8 1699784 1704691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00140 1 758 Glycoside Hydrolase AT1G55740 71.842 0.0 1120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00140 K06617 - gmx:100785506 1415.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00140 8 1699784 1704691 Seca8g00140 8 1699784 1704691 ECH