Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00106 ATGCACAGGCTCTCTAGGCGCTCTTCCTCCGTCTCCGCCATACTGCGCTACGGCGGCGCACTCCGCCGGGACGCAGTTGCGCCACTCTCCTCTTCTTATTCTGCTTCGGTGGGTGAGAATGACACCAAAGCCAAATGGTATTCTTTCATAAGTTCTGAGAAATTCAGTACTGTGAAATCTACAAATCAGCCAAACTTAAAAAATGATCTGTTTCTGGGTAAACGATATGAATCAACTGCTGCTGAATCTGCTTCATCCAGTTCCCCACCAGCTGAGAGATTTGAGTACCAAGCAGAGGTTAGTCGACTCATGGATCTCATTGTTAACAGTTTATACAGCAACAAGGAAGTGTTTCTTCGGGAACTTATCAGCAATGCAAGTGATGCCTTGGATAAGCTGCGGTTTTTGAGTGTTACAGAGCCTGCACTGTCGAAGGATGCTGTTGATTTTGATATCCGCATTCAAGCTGATAAAGATAATGGGATTATCACTATTACTGATACAGGCATTGGTATGACTAGGCAAGAACTAGTTGATTGTCTCGGAACTATAGCTCAAAGTGGAACTGCAAAGTTTTTGAAGGCTGTAAAGGAAAGCAAGGATGCTGGTGGTGACAACAACTTAATTGGTCAATTTGGTGTGGGATTTTATTCTGCTTTTCTCGTTGCTGATCGGGTGGTTGTCTCAACCAAGAGTCCAAGATCTGATAAACAATATGTTTGGGAAGGTGAGGCAAATGCTAGCTCATATACCATATCTGAGGAGACAGATCCTGAGAAGCTGATTCCAAGAGGAACTCGCCTTACACTGTATCTTAAGAGGGATGACAAAGGGTTTGCTCATCCAGAGCGGATTCAGAAGCTTGTTAAAAACTACTCACAATTTGTCTCATTCCCGATATACACTTGGCAGGAAAAGGGATATACTAAAGAAGTGGAGGTTGATGAGGATCCAGCTGAAGCCAAAACGGACGAACAAGATGAGAAGACTGAGAAAAAGAAGAAAACTAAGACTGTTGTTGAGCGGTACTGGGATTGGGAGCTCACAAATGAGACTCAACCTATCTGGCTTCGTAATCCTAAAGAAGTCACTAAGGAGGAATATAATGAGTTTTACAAGAAAACATTTAATGAATACTTGGAGCCATTGGCATCATCCCACTTTACCACAGAGGGTGAAGTAGAATTTAGGTCTATACTTTATGTACCTGCCTATGCTCCCTCAGGGAAGGATGATATGATCAATCCCAAGACCAAGAATATAAGACTTTATGTGAAGAGAGTGTTCATTTCAGATGACTTCGATGGAGAACTGTTCCCCAGATATTTAAGTTTTGTCAAAGGTGTGGTTGACTCAAATGACCTTCCACTCAATGTGTCACGTGAAATACTTCAAGAGAGCCGCATAGTGCGGATTATGAGGAAACGCTTAGTTAGAAAGGCTTTTGACATGATTCTGGGGATATCCATGAGTGATAACAGAGAGGACTATGAGAAGTTCTGGGAGAACTTTGGCAAACACTTGAAATTAGGTTGCATTGAAGACCGGGAGAATCACAAACGTATTGCTCCATTGCTTCGGTTTTTCTCATCCCAAAGTGATGAAGAACTGATCAGCTTGGATGAATATGTTGAGAACATGAAACCTGATCAAAAGGATATTTATTACATTGCTGCTGACAGTGTGACTAGTGCAAGGAACACACCTTTCTTGGAGAAACTCATGGAGAAGGATCTTGAAGTATAA 1746 0.4227 MHRLSRRSSSVSAILRYGGALRRDAVAPLSSSYSASVGENDTKAKWYSFISSEKFSTVKSTNQPNLKNDLFLGKRYESTAAESASSSSPPAERFEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRFLSVTEPALSKDAVDFDIRIQADKDNGIITITDTGIGMTRQELVDCLGTIAQSGTAKFLKAVKESKDAGGDNNLIGQFGVGFYSAFLVADRVVVSTKSPRSDKQYVWEGEANASSYTISEETDPEKLIPRGTRLTLYLKRDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAEAKTDEQDEKTEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTKEEYNEFYKKTFNEYLEPLASSHFTTEGEVEFRSILYVPAYAPSGKDDMINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSDNREDYEKFWENFGKHLKLGCIEDRENHKRIAPLLRFFSSQSDEELISLDEYVENMKPDQKDIYYIAADSVTSARNTPFLEKLMEKDLEV. 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00106 581 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 114 274 IPR003594 -
Seca8g00106 581 MobiDBLite consensus disorder prediction 312 334 - -
Seca8g00106 581 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 83 581 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca8g00106 581 Gene3D - 523 581 - -
Seca8g00106 581 Gene3D - 350 522 - -
Seca8g00106 581 Gene3D - 78 322 IPR036890 -
Seca8g00106 581 PIRSF HSP90_HTPG 51 581 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca8g00106 581 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 92 306 IPR036890 -
Seca8g00106 581 FunFam heat shock protein 90-5, chloroplastic 79 321 - -
Seca8g00106 581 CDD HATPase_Hsp90-like 101 296 IPR020575 -
Seca8g00106 581 ProSitePatterns Heat shock hsp90 proteins family signature. 112 121 IPR019805 GO:0005524|GO:0006457|GO:0051082
Seca8g00106 581 FunFam heat shock protein 90-5, chloroplastic 350 522 - -
Seca8g00106 581 PRINTS 90kDa heat shock protein signature 264 281 IPR020575 -
Seca8g00106 581 PRINTS 90kDa heat shock protein signature 113 135 IPR020575 -
Seca8g00106 581 PRINTS 90kDa heat shock protein signature 282 300 IPR020575 -
Seca8g00106 581 PRINTS 90kDa heat shock protein signature 92 112 IPR020575 -
Seca8g00106 581 PRINTS 90kDa heat shock protein signature 162 179 IPR020575 -
Seca8g00106 581 PRINTS 90kDa heat shock protein signature 180 197 IPR020575 -
Seca8g00106 581 PRINTS 90kDa heat shock protein signature 209 231 IPR020575 -
Seca8g00106 581 Pfam Hsp90 protein 279 581 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca8g00106 581 SUPERFAMILY Ribosomal protein S5 domain 2-like 352 581 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00106 Seca-Chr8 1356157 1362237 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00106 K09487 - gmx:100794913 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00106 8 1356157 1362237 Seca8g00106 8 1356157 1362237 ECH