Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00061 ATGAAGAAACAAGTCATTTCCACTTCTCTAGTCTTGTTCTTCCTCATTCCCCTTGTTTCCTCCGCCGCTTCCGCCAATGGCAGCCACAACATCACTCGCATCCTCGCCGACCACCCTGGTTTCTCCACCTTCAACCACTACCTCACCGTCACCCACCTCGCCGACGAAATCAACCGCCGCCAAACCATCACCGTCCTCGCCCTCGACAATGCCGCCATGTCCTCTCTCCTCGACAAACACCTCACCCTCGGCACACTCAAAAACGTCCTCTCCCTCCACGTCTTAGTCGACTACTTCGGCACCAAAAAGCTTCACCAGATCTCCAACAGAACCACTCTCGTTTCCTCCATGTTCCAAGCCACAGGAGCCGCCGCCGGCACCGCCGGTTACGTCAACATCACGAATCTCCGTGGCGGCAAAGTTGGCTTCGCCGCCGAAGACAACGACGGCCTCCATTCGTTCTACGTGAAATCCGTCATCGAAAAGCCATACGTCATCTCTGTTCTTCAAATCAGTCAACCCCTGAGTTCCGCCGATGCAGAGGCTCCAACTGCAGCTCCAAGCGAAATTGACATAATCTCAATCATGTCAAAGCAAGGTTGCAAGGCTTTTGCAGATCTATTGAGAGGCTCAAAAGCGCTTCCTACTTTCAAGGAAAACGTTGCTGGTGGATTAACCGTTTTTTGCCCAACTGACTCTGCTGTTAGCGGTTTCGCGCCAAAATACAAGAATCTAACGGATTCACACAAGGTTTCATTGCTGTTGTATCATGGAATCCCTGTTTATCAGTCCTTGCAGATGTTGAAATCGAGCAATGGGATTATGAACACTCTGGCTACTGAAGGAGCGAACAAGTACGATTTCACAGTGCAGAATGATGGAGAGGATGTGAAATTGGAGACTAAGGTTAACACTGCAAATATAGTGGGGACATTGATTGATCAAGATCCTTTTGTGGCTTATAAGATTAACAAGGTGTTGATGCCTAGGGAGTTGTTTAAGGGATACGTGGAGGCACCTGCTGAGTCACCTAAGGGAGCGAAGAGTAAGAAGAAGAAAGGGGCAGCAGATGCACCAGCAGATGGACCAGCAGGAGATGAAGCAGATGATCAGAAGGCTGCGGATGACAATAATGGAGTGAGTGGATTGAACAATGGACGGTTCAGATTTGTGATGGTGTTGTTGAGCTTGTTTGTTGGGGTTTTGGTGCTATAA 1215 0.493 MKKQVISTSLVLFFLIPLVSSAASANGSHNITRILADHPGFSTFNHYLTVTHLADEINRRQTITVLALDNAAMSSLLDKHLTLGTLKNVLSLHVLVDYFGTKKLHQISNRTTLVSSMFQATGAAAGTAGYVNITNLRGGKVGFAAEDNDGLHSFYVKSVIEKPYVISVLQISQPLSSADAEAPTAAPSEIDIISIMSKQGCKAFADLLRGSKALPTFKENVAGGLTVFCPTDSAVSGFAPKYKNLTDSHKVSLLLYHGIPVYQSLQMLKSSNGIMNTLATEGANKYDFTVQNDGEDVKLETKVNTANIVGTLIDQDPFVAYKINKVLMPRELFKGYVEAPAESPKGAKSKKKKGAADAPADGPAGDEADDQKAADDNNGVSGLNNGRFRFVMVLLSLFVGVLVL. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00061 404 ProSiteProfiles FAS1/BIgH3 domain profile. 28 194 IPR000782 -
Seca8g00061 404 FunFam Fasciclin-like arabinogalactan protein 10 181 330 - -
Seca8g00061 404 SUPERFAMILY FAS1 domain 34 159 IPR036378 -
Seca8g00061 404 FunFam Fasciclin-like arabinogalactan protein 2 27 168 - -
Seca8g00061 404 MobiDBLite consensus disorder prediction 342 378 - -
Seca8g00061 404 Gene3D FAS1 domain 192 330 IPR036378 -
Seca8g00061 404 Gene3D FAS1 domain 28 162 IPR036378 -
Seca8g00061 404 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 375 IPR033254 -
Seca8g00061 404 Pfam Fasciclin domain 40 112 IPR000782 -
Seca8g00061 404 Pfam Fasciclin domain 201 329 IPR000782 -
Seca8g00061 404 ProSiteProfiles FAS1/BIgH3 domain profile. 188 327 IPR000782 -
Seca8g00061 404 SMART fasc_3 226 330 IPR000782 -
Seca8g00061 404 SUPERFAMILY FAS1 domain 186 330 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00061 Seca-Chr8 793882 795096 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00061 - - gmx:100799605 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00061 8 793882 795096 Seca8g00061 8 793882 795096 ECH