Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05064 ATGGAACTAGCTCAGCATAGAATAATGGAGAATGGAGAAGCTGAGGAGATGGACGGTGAAACTTCTGCAAGGGTGGCTCTCACGGAAAGTCGAATCTACCCTTCCCATCCTGCAGGTTTGGTGAAGAAGAGAGCGTATATATTTGATGGGTTGGGGAATTTTTATAACAAGGAGTGGGATCTAGCAGACCTTTATCAAAAAGAAGAAAAGGAAAGGGCTGTACCAGAAGGACGGGGGAATGAGTTTTCTTGGTACCATGTGGAACTTCCAAAAGGAAATCAAAAGTTGTCACAATCTGCACAGGACCTCATTGGTGTTCTCTGCCCCCCTTTGAAACTCCAAGACATTCTCTCACTTGTTAGTAATGGACCCTTTTGTGCACATGTAGATGGGGCACTTGTCTTCCGGGTTAATTCACCTGGTCCTCCCTCCAGTGACTTCACATTTAGAATTGCTGCTAGAGTTACTGAAAATTCAGTAATTACCGTGTCCTTGGGGCGTGTTCCCCGTCTAGGCTTCTCACGCATGGGTGAATCTCTGCTTTCTGAAATTCCTAGTGTTGAAAGCTCCCCTCAATTTAGAGGTCAGCAGAAGGAAAGAAGTGGGATTGTGATTAAGGAGCATGTTCTTGAATTCTTATTGACCATGAATCACTCTGAGGAAGCTGACAACCCTGTGCCTAGATCTGTCTCCAATCTTGTAGTTCATATAATTGACACACATGTAGATCAGCTTCAAGATATTGTGACAAAGCTTGAGATGGAGTTGGACTCTGTGGAGCTCGACTTAGATAAAGGTGGTTATGCTCTGAAGAAACAAATGCTAGATGACAGAAGATTCCCCAAACTGCATATTAATTTGCAGCGTCTCCTGCAGGTGATTGCCCATGGAGAACAAGTATTTCTCCGTGTCAAAGAAAAATGCTCTTCCAAAAGGTGGTTTGCGAATGAAGACATTAACTCCCTTGAAGAACTAATTGGAAGGTTAAGGAGACTGAAGGAGAATGTAGGGTTTATAGTAAATCGTGTCACAGCAATTCAGGCTGGTCTTGACAGCTGGCAATCAGAACAAATAAATAGGAAACTGTACTATCTTTCATTCCTTTCAATAGTATTCCTCCCTTTGTCCATCATAACAGGAGTCTTTGGCATGAATGTGGGAGGAGTTCCATGGACAGGTCAAGATGCTCCAGAGCTAAAGGATGGTTTTCGTAATGTCATGCTAGTCTGCGTCGCCATGCTACTTCTTGTACTACTCTGCTTCATTTTCCCAGCTCTTTATACTCGTGTAGCTGCTACTTGGCAAAATAAAAGAGCTCTGGGAAGAAACTGGTCACTGAACAGGAAGTCATTGCTCAGGAGATCATTAAGAATAGGAGATAATGAGAGAGGGGGCTACCTTCGGATTTAA 1410 0.434 MELAQHRIMENGEAEEMDGETSARVALTESRIYPSHPAGLVKKRAYIFDGLGNFYNKEWDLADLYQKEEKERAVPEGRGNEFSWYHVELPKGNQKLSQSAQDLIGVLCPPLKLQDILSLVSNGPFCAHVDGALVFRVNSPGPPSSDFTFRIAARVTENSVITVSLGRVPRLGFSRMGESLLSEIPSVESSPQFRGQQKERSGIVIKEHVLEFLLTMNHSEEADNPVPRSVSNLVVHIIDTHVDQLQDIVTKLEMELDSVELDLDKGGYALKKQMLDDRRFPKLHINLQRLLQVIAHGEQVFLRVKEKCSSKRWFANEDINSLEELIGRLRRLKENVGFIVNRVTAIQAGLDSWQSEQINRKLYYLSFLSIVFLPLSIITGVFGMNVGGVPWTGQDAPELKDGFRNVMLVCVAMLLLVLLCFIFPALYTRVAATWQNKRALGRNWSLNRKSLLRRSLRIGDNERGGYLRI. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05064 469 SUPERFAMILY CorA soluble domain-like 79 348 IPR045861 -
Seca6g05064 469 Coils Coil 242 262 - -
Seca6g05064 469 PANTHER OS08G0130000 PROTEIN 1 469 - -
Seca6g05064 469 Gene3D Magnesium transport protein CorA, transmembrane region 227 353 - -
Seca6g05064 469 Coils Coil 315 335 - -
Seca6g05064 469 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 357 421 IPR045863 -
Seca6g05064 469 Gene3D Magnesium transport protein CorA, transmembrane region 354 426 - -
Seca6g05064 469 Pfam CorA-like Mg2+ transporter protein 222 422 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05064 Seca-Chr6 117879392 117884279 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05064 - - gmx:100817220 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05064 6 117879392 117884279 Seca6g05064 6 117879392 117884279 ECH