Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05061 ATGTCATCCGCCGTCCTAGCTAACCGGAACGAACCTAATTGGCCACAGCATAGAGGCGGTGGAGCAGGATTCATGGGAAAAGTACCTTTCTCTAACTCTAACCCTAACCCTAAATTAGCGAACAGCAAAAGAACCCAATCGGCGTCCGATGATGCATCCTCCATCAACCGGCGACCGAGCGACGTCGTCAATCACTCCCAATACGTGACGTTCAACGTGGCGTCGTACACGAAGAAGGAGCTGATCGACCTGAAGAATCGCCTCGTTTTGGAGCTCGAACAGATTCGGAAGCTCAAGAATCGAATCGAATCTGGCGAGTTTCAACCTGGCCAGAGCTTCAACGGCCCAACCAAGAAATCAACGATGAGCAAGAAGATTTCCGGCAACAAGCGTCCATTTCCGTTGAATTCTGCCAAGGATTTGAAACGGTCGCATTCAGAGGTGGGGAACTTGATGAAGGGTTGTGCACAGGTTTTGCAGAAATTGATGAAACACAAACATGGGTGGATCTTCAATGTTCCGGTCGATGTTGTTGGGATGGGTCTACACGATTACTACGATGTTATTAAGAAACCCATGGATCTAGGTACGGTGAAGTCTAATCTCTCTAAAAACATGTACGCCACGCCTTCGGATTTTGCGTCTGATGTGCGATTGACGTTCAACAATGCACTGTTGTATAACCCTAAGGGTCACGATGTATACACCATGGCGGAGCAGCTTCTTGCGAGGTTTGAGGAGCTGTATCGCCCCTTGCATGAGAAATGTGAAGATTGGCAGAGACAAGATCGCGATTTTGATGAGGAATTGCAGGCCAGTTCGTGGAACCATGTACAGCCAGAGAGGATGAAGAAGAAGGAGAATCCAATCCCTCCTGCGAAATTGCAACAAGAACCCCCGCAGCCCCCTGCGAGTTCTTCAAACCCTCCGTTGTTGCAGTCTCCGGTGCGCACACCGTCCCCGATGCGAGCCCCTCCAGTGAAGCCTTTGAAGCAACCCAAGCCGAAGGCCAAGGACCCCAATAAGAGGGAAATGAGTCTTGAGGAGAAGCACAAGTTGGGAATTGGGTTGCAAAGTTTGCCACCAGAGAAAATGGAACAGGTGGTGCAGATCATAAGGAAGAGGAATGGGCACTTAAAGCAGGATGGGGATGAGATCGAGCTTGATATTGAGGCCGTTGATACAGAGACCCTTTGGGAACTTGATAGATTGGTGACTAATTGGAAGAAGATGGTGAGCAAGATTAAGCGTCAGGCTCTAATGAATAACAACAATGTGGCATCGAACAAAAGCAATGGGGAATTACCTGCTAGCGAGAAGGTTGATGCAGCGCCAGTTGAGGCAAAGAAGCCAAAGAAAGTGGAAGCAGGGGATGAGGATGTTGACATTGGGGACGAGATGCCAATGAGCATGTTTCCCCCGGTGGAAATTGAGAAAGATAAAGATGTCGTTGGAGGCCACGCAAGTAGTAGTTCTAGTAGCTCGAGCAGTTCAAGTAGTGATTCCTCGTCATCAAGCGGTATTTATCTGTTTCTAGTAGGCTTTGCTTTGTAG 1554 0.4871 MSSAVLANRNEPNWPQHRGGGAGFMGKVPFSNSNPNPKLANSKRTQSASDDASSINRRPSDVVNHSQYVTFNVASYTKKELIDLKNRLVLELEQIRKLKNRIESGEFQPGQSFNGPTKKSTMSKKISGNKRPFPLNSAKDLKRSHSEVGNLMKGCAQVLQKLMKHKHGWIFNVPVDVVGMGLHDYYDVIKKPMDLGTVKSNLSKNMYATPSDFASDVRLTFNNALLYNPKGHDVYTMAEQLLARFEELYRPLHEKCEDWQRQDRDFDEELQASSWNHVQPERMKKKENPIPPAKLQQEPPQPPASSSNPPLLQSPVRTPSPMRAPPVKPLKQPKPKAKDPNKREMSLEEKHKLGIGLQSLPPEKMEQVVQIIRKRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNWKKMVSKIKRQALMNNNNVASNKSNGELPASEKVDAAPVEAKKPKKVEAGDEDVDIGDEMPMSMFPPVEIEKDKDVVGGHASSSSSSSSSSSSDSSSSSGIYLFLVGFAL. 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05061 517 CDD Bromo_plant1 151 249 IPR037377 -
Seca6g05061 517 MobiDBLite consensus disorder prediction 29 60 - -
Seca6g05061 517 Coils Coil 78 101 - -
Seca6g05061 517 MobiDBLite consensus disorder prediction 443 459 - -
Seca6g05061 517 MobiDBLite consensus disorder prediction 486 506 - -
Seca6g05061 517 Pfam Bromodomain extra-terminal - transcription regulation 344 406 IPR027353 -
Seca6g05061 517 ProSiteProfiles NET domain profile. 335 416 IPR027353 -
Seca6g05061 517 MobiDBLite consensus disorder prediction 293 331 - -
Seca6g05061 517 MobiDBLite consensus disorder prediction 332 346 - -
Seca6g05061 517 PRINTS Bromodomain signature 182 198 IPR001487 GO:0005515
Seca6g05061 517 PRINTS Bromodomain signature 216 235 IPR001487 GO:0005515
Seca6g05061 517 PRINTS Bromodomain signature 166 179 IPR001487 GO:0005515
Seca6g05061 517 PRINTS Bromodomain signature 198 216 IPR001487 GO:0005515
Seca6g05061 517 SMART bromo_6 144 254 IPR001487 GO:0005515
Seca6g05061 517 MobiDBLite consensus disorder prediction 106 127 - -
Seca6g05061 517 MobiDBLite consensus disorder prediction 106 137 - -
Seca6g05061 517 Pfam Bromodomain 155 239 IPR001487 GO:0005515
Seca6g05061 517 MobiDBLite consensus disorder prediction 273 346 - -
Seca6g05061 517 SUPERFAMILY Bromodomain 146 255 IPR036427 GO:0005515
Seca6g05061 517 MobiDBLite consensus disorder prediction 424 506 - -
Seca6g05061 517 ProSiteProfiles Bromodomain profile. 163 235 IPR001487 GO:0005515
Seca6g05061 517 Gene3D - 115 269 IPR036427 GO:0005515
Seca6g05061 517 PANTHER OSJNBA0053K19.4 PROTEIN 59 506 - -
Seca6g05061 517 MobiDBLite consensus disorder prediction 1 60 - -
Seca6g05061 517 Gene3D - 338 415 IPR038336 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05061 Seca-Chr6 117853457 117856378 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05061 - - gmx:100802622 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05061 6 117853457 117856378 Seca6g05061 6 117853457 117856378 ECH