Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05054 ATGGAGCTGAGTAGCATCAAAGATGCATTTGATCGTGTAGCTAAGAAGCAGAAGTTATCCTCTTCCAAGTCTCAAGAAGTTGTTGACCAGGTAGGGCATGAAATTGAACAGGCATTGGCGACAATTCAGTCACCACATGACCCCTCAACTCCTGTTGACCAGAAATCCATTCTTACAGAACTCAAGTCTAAGCTTAATGCTATTGGAGCACTTCAACAGTTAGAAGGTTCACATAAGGAATTGAACATAAGTCTTACAAAGTATCAAAAACTCCTTGAAAAATTGTTTAACCCTGACATATCAAAAGCATACAGAAATGTGGACTTTGATACTCATATTATCAATCAGATCATTGCAAGCCACTTTTACCGTCAAGGTTTATTTGATCTTGGAGATAGCATCATAAAAGAGGCTGGAGAGCTTGATGCAACTGCTCTGAGATCTCAGTTCTTGGAAATGCATCAGATTATTCAAGCTATGAGGGAAAGAAATCTTCAGCCTGCCCTCACATGGGTCTCTGCCAACCGAGAGAAACTTGTCCAGATTGGTTCCAATCTTGAGCTTAAGATTCACACACTACAGTTTGTAGAGGTTCTGCAAAATGGAACTCGAGCTGATGCCCTAAAATATGCCCGAACTTATCTTGCTCCTTTTGCTTCCCTCAACAAGGATGAGTTCCAAAAGCTTATGGGTTGCCTCTTGTATGCAGGAAGGCTTGAGAGCTCCCCTTATTCTGAGTTGATGTCCCCAATTCATTGGGAGATGACAACTGAAGAGCTGGCACGTCAGTTCTGCACTCTCTTGGGGCAGTCCTATGAGAACCCCCTGAGTGTGGCAGTTGCAGCTGGAGTTGAGGGGTTGCCTACACTGTTAAAGTTGGCAAATGTAATGGCAGCAAAGAAGCAGGAGTGGCAGGAAATGAAACAGTTGCCTGTGCCTGTAGAATTGGGTAAGGAATTTCAGTTCCATTCGATTTTTGTTTGCCCTGTGAGTAGGGATCAAGGAAGTGAAGAGAATCCTCCCATGCTGCTGCCATGTTTACATGTCCTCTGCAAGCAATCAATTATGAAGTTATCTAAAAACAGCACGCGAACATTCAAGTGTCCATATTGTCCTGCGGAAGCTACAGTTGCACACTGCAGACAGCTGTATTTCTGA 1158 0.4335 MELSSIKDAFDRVAKKQKLSSSKSQEVVDQVGHEIEQALATIQSPHDPSTPVDQKSILTELKSKLNAIGALQQLEGSHKELNISLTKYQKLLEKLFNPDISKAYRNVDFDTHIINQIIASHFYRQGLFDLGDSIIKEAGELDATALRSQFLEMHQIIQAMRERNLQPALTWVSANREKLVQIGSNLELKIHTLQFVEVLQNGTRADALKYARTYLAPFASLNKDEFQKLMGCLLYAGRLESSPYSELMSPIHWEMTTEELARQFCTLLGQSYENPLSVAVAAGVEGLPTLLKLANVMAAKKQEWQEMKQLPVPVELGKEFQFHSIFVCPVSRDQGSEENPPMLLPCLHVLCKQSIMKLSKNSTRTFKCPYCPAEATVAHCRQLYF. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05054 385 Pfam RING-type zinc-finger 328 369 IPR027370 -
Seca6g05054 385 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 2 384 IPR045098 GO:0004842|GO:0043161
Seca6g05054 385 SMART toby_final6 202 296 IPR013144 -
Seca6g05054 385 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 149 206 IPR006595 -
Seca6g05054 385 SUPERFAMILY RING/U-box 322 381 - -
Seca6g05054 385 Pfam CTLH/CRA C-terminal to LisH motif domain 149 290 IPR024964 -
Seca6g05054 385 FunFam Regulator of gluconeogenesis Rmd5 320 384 - -
Seca6g05054 385 Coils Coil 71 91 - -
Seca6g05054 385 SMART ctlh 149 206 IPR006595 -
Seca6g05054 385 CDD dRING_Rmd5p-like 326 374 IPR037683 -
Seca6g05054 385 ProSiteProfiles Gid-type RING finger profile. 328 371 IPR044063 GO:0061630
Seca6g05054 385 ProSiteProfiles LIS1 homology (LisH) motif profile. 110 142 IPR006594 GO:0005515
Seca6g05054 385 SMART ring_2 328 371 IPR001841 -
Seca6g05054 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 384 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05054 Seca-Chr6 117787919 117789076 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05054 K23333 - gmx:100782483 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05054 6 117787919 117789076 Seca6g05054 6 117787919 117789076 ECH