Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05041 ATGATCTTAGCCATTTTCCTCATGTGCTCATCAACAAGCCTGATGTCTATGGCCCAAAACTCTCCTCAAGACTTCCTTGAGGTACACAATCAAGCCCGAGGAGAGGTTGGTGTGGGCCCACTTTCATGGAACCACACACTTGAAGCCTATGCTCAAAACTATGCCAATGAGAGAATCGGTGACTGCAACCTTGAGCACTCAATGGGGCCATTTGGCGAGAACCTCGATGCAGTCAAGTTCTGGCTCACTGAGAAGCCTTACTATGACCACCACTCAAACGCATGTGTTCATGATGAGTGCCTGCATTATACTCAGATTGTATGGCGTGATTCGGTTCATCTTGGGTGTGCAAGGTCTAAGTGTGACAATGGGTTGGGCTTAGTCATTAATAATGTTGTCTATGCTCAAGACTCACCAACAGACTACGTCAATGCACACAACGCTGCAAGAGCAGAGGTGAATGTTCCAAATTTGGTTTGGGATGATACTGTTGCTGCCTTTGCACAGAACTATGCTAATCAACGTAAGGATTGCCAACTGATCCACTCAGGTGGTGGTGGCAAATACGGTGAGAACCTCGCAATGAGCACCGGTGACATGAGTGGCACAGACGCTGTCGTTTGGAGAAACACACAACGCGTTGGATGTGCCAAAGTAAGGTGTGACAATGGAGGCACATTCATCACTTGCAACTATGACCCTCCTGGCAACTATGTTGGAGAAAAACCGGTTTCACTTTCTCTTTTGTGTGTGTTGGGCTTAGTCATTAATATTGTCTATGCTCAAGACTCACCAACAGACTACCTTAACGCCCACAACGCAGCAAGGTCAGAGGTTAAGGTTCCAAATTTGGTTTGGGATGAGACTGTGGCTGCTTTTGCACGTAACTATGCTAATCAACGTAAGGGAGACTGCAAACTTGTCCACTCAGGTGGTGCAATGAGCACTGGTGACATGAGTGGGAGAGACGCAGTGAGATTGTGGGTGAACGAGAAAGCAGACTATGACTACAATTCTAACTCTTGTGCTAGTGGGAAGCAGTGCGGTCACTACACTCAAGTCGTTTGGAAAAACACAAAACGTGTTGGATGTGCCAAAGTAAGGTGTAACAATGGAGCCATAGCCATATCCTCACAAATGTGTTATGGTCAAGACTCACCACAGGACTACCTCAACGTTCACAACAGAGCCCGTTCCGAAGTTGGAGTTGGACCTATGAGATGGGATGCAAATGTTGCAGCTTATGCACAAAATTATGTGAACACACTGAAAGGAAACTGCAAGATGGTGCACTCAAAGGGTCCTTACGGAGAGAACCTTGCGTGGAGCAGTGGTGACCTTACAGGAACAGCTGCTGTGAACATGTGGGTGGCAGAGAAGCCAAACTATGACTACAATTCTAACTCCTGTGTGGGTGGCAAGTGCGGGCACTACACTCAGGTTGTTTGGCGCAACTCTGTTCGTCTTGGGTGTGCAAAGGTGCGTTGCAACGATGGCCGTAGTACAATCATTAGCTGCAACTATGACCCACCAGGTGTGTTGGGCTCAGTCATTAATAATGTTGTCTATGCTCAAGACTCACCATCCGACTACGTGGATGCACACAACGCTGCAAGGGCAGAGGTGAATGTTCCAAATTTGGTTTGGGATGACACTGTTGCTGCCTTTGCAGAGAACTATGCTAATCAACGTAAGGACTGCCAACTGATCCACTCAGGTGGTGGTGGCAAATACGGTGAGAACATCGCAGTGGTTTGGAAAAACACACAACGTCTTGGATGTGCCAAAGTAACATGTGATAATGGAGGTACATTCATCACTTGCAACTATGACCCTCCTGGTGTGTTGGGCTTAGTCATTAGTAATGCTGTGTATGCTCAAGACTCACCATCAGACTACGTGGATGCACACAACGCTGCAAGGGCAGAGGTGAATGTTCCAAATTTGGTTTGGGATGACACTGTTGCTGCCTTTGCAGAGAACTATGCTAATCAACGTAAGGACTGCCAACTGATCCACTCAGGTGGTGGTGGCAAATACGGTGAGAACATCGCAATGAGCACCGGTGACATGAGTGGCACAGACGCAGTGAAAATGTGGGTGGATGAGAAAGCCAACTATGACTACAATTCTAACTCTTGTGTTAATGGGAAGCAGTGCGGCCACTACACTCAAGTCGTTTGGAAAAACACACAACGCGTTGGATGTGCCAAAGTAAGGTGTAACAATGGAGGCACATTCATCACTTGCAACTATGACCCCCAGGGCAACATCATTGGAGAAAGGCCCTATTAA 2295 0.4728 MILAIFLMCSSTSLMSMAQNSPQDFLEVHNQARGEVGVGPLSWNHTLEAYAQNYANERIGDCNLEHSMGPFGENLDAVKFWLTEKPYYDHHSNACVHDECLHYTQIVWRDSVHLGCARSKCDNGLGLVINNVVYAQDSPTDYVNAHNAARAEVNVPNLVWDDTVAAFAQNYANQRKDCQLIHSGGGGKYGENLAMSTGDMSGTDAVVWRNTQRVGCAKVRCDNGGTFITCNYDPPGNYVGEKPVSLSLLCVLGLVINIVYAQDSPTDYLNAHNAARSEVKVPNLVWDETVAAFARNYANQRKGDCKLVHSGGAMSTGDMSGRDAVRLWVNEKADYDYNSNSCASGKQCGHYTQVVWKNTKRVGCAKVRCNNGAIAISSQMCYGQDSPQDYLNVHNRARSEVGVGPMRWDANVAAYAQNYVNTLKGNCKMVHSKGPYGENLAWSSGDLTGTAAVNMWVAEKPNYDYNSNSCVGGKCGHYTQVVWRNSVRLGCAKVRCNDGRSTIISCNYDPPGVLGSVINNVVYAQDSPSDYVDAHNAARAEVNVPNLVWDDTVAAFAENYANQRKDCQLIHSGGGGKYGENIAVVWKNTQRLGCAKVTCDNGGTFITCNYDPPGVLGLVISNAVYAQDSPSDYVDAHNAARAEVNVPNLVWDDTVAAFAENYANQRKDCQLIHSGGGGKYGENIAMSTGDMSGTDAVKMWVDEKANYDYNSNSCVNGKQCGHYTQVVWKNTQRVGCAKVRCNNGGTFITCNYDPQGNIIGERPY. 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05041 764 ProSitePatterns CRISP family signature 1. 349 359 IPR018244 GO:0005576
Seca6g05041 764 CDD CAP_PR-1 387 512 - -
Seca6g05041 764 FunFam Putative pathogenesis-related protein 1 627 764 - -
Seca6g05041 764 Pfam Cysteine-rich secretory protein family 269 373 IPR014044 -
Seca6g05041 764 Pfam Cysteine-rich secretory protein family 143 189 IPR014044 -
Seca6g05041 764 Pfam Cysteine-rich secretory protein family 391 508 IPR014044 -
Seca6g05041 764 Pfam Cysteine-rich secretory protein family 634 752 IPR014044 -
Seca6g05041 764 Pfam Cysteine-rich secretory protein family 26 126 IPR014044 -
Seca6g05041 764 SUPERFAMILY PR-1-like 10 128 IPR035940 -
Seca6g05041 764 Gene3D CAP 584 628 IPR035940 -
Seca6g05041 764 Gene3D CAP 206 247 IPR035940 -
Seca6g05041 764 SUPERFAMILY PR-1-like 623 764 IPR035940 -
Seca6g05041 764 Gene3D CAP 137 205 IPR035940 -
Seca6g05041 764 Gene3D CAP 15 136 IPR035940 -
Seca6g05041 764 Gene3D CAP 521 583 IPR035940 -
Seca6g05041 764 Gene3D CAP 629 764 IPR035940 -
Seca6g05041 764 Gene3D CAP 263 382 IPR035940 -
Seca6g05041 764 Gene3D CAP 384 519 IPR035940 -
Seca6g05041 764 PRINTS Allergen V5/Tpx-1 family signature 696 709 IPR001283 -
Seca6g05041 764 PRINTS Allergen V5/Tpx-1 family signature 720 736 IPR001283 -
Seca6g05041 764 PRINTS Allergen V5/Tpx-1 family signature 547 565 IPR001283 -
Seca6g05041 764 PRINTS Allergen V5/Tpx-1 family signature 747 760 IPR001283 -
Seca6g05041 764 ProSitePatterns CRISP family signature 1. 476 486 IPR018244 GO:0005576
Seca6g05041 764 SMART SCP_3 263 383 IPR014044 -
Seca6g05041 764 SMART SCP_3 20 134 IPR014044 -
Seca6g05041 764 SMART SCP_3 137 240 IPR014044 -
Seca6g05041 764 SMART SCP_3 628 760 IPR014044 -
Seca6g05041 764 SMART SCP_3 385 515 IPR014044 -
Seca6g05041 764 SMART SCP_3 526 617 IPR014044 -
Seca6g05041 764 ProSitePatterns CRISP family signature 2. 227 238 IPR018244 GO:0005576
Seca6g05041 764 CDD CAP_PR-1 265 372 - -
Seca6g05041 764 ProSitePatterns CRISP family signature 2. 747 758 IPR018244 GO:0005576
Seca6g05041 764 ProSitePatterns CRISP family signature 1. 721 731 IPR018244 GO:0005576
Seca6g05041 764 SUPERFAMILY PR-1-like 380 512 IPR035940 -
Seca6g05041 764 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 23 130 IPR001283 -
Seca6g05041 764 SUPERFAMILY PR-1-like 137 243 IPR035940 -
Seca6g05041 764 FunFam Putative pathogenesis-related protein 1 384 517 - -
Seca6g05041 764 SUPERFAMILY PR-1-like 527 614 IPR035940 -
Seca6g05041 764 FunFam CAP, cysteine-rich secretory protein, antigen 5 19 137 - -
Seca6g05041 764 CDD CAP_PR-1 630 764 - -
Seca6g05041 764 SUPERFAMILY PR-1-like 258 373 IPR035940 -
Seca6g05041 764 FunFam CAP, cysteine-rich secretory protein, antigen 5 262 382 - -
Seca6g05041 764 CDD CAP_PR-1 22 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05041 Seca-Chr6 117643800 117681846 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05041 K13449 - dzi:111308062 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05041 6 117643800 117681846 Seca6g05041 6 117643800 117681846 ECH