Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05040 ATGATGATGGCTGTCCTAGCCGTATCATCACAAATGTCTTATGCTCAAAACTCCCCACAGGACTACCTGGACGCTCACAACAGAGCACGTTCCCAGGTTGGGGTTGGGCCTATAAGATGGGATGCAACTGTTGCAGCTTATGCACAAAATTACATTAACACACTGAGGGGCAGCTGCAAGCTGGTGCACTCAAAGGGTCCTTACGGAGAGAACCTTGCGTGGAGCAGTGGTGACCTCACAGGAACAGCTGCTGTGAACATGTGGGTGGCAGAGAAGCCTAACTATAACTACAACTCCAATTCCTGTGTTGGTGGCGAGTGCAGGCACTATACTCAGGTCGTTTGGCGCAACTCTGTTCGTCTTGGCTGTGCAAAAGTGCGTTGTAGCAATGGTCGTAGCACCATCATCAGCTGCAACTATGATCCACCAGGCAACTTTATCGATGAGAGGCCTTATGATATTAGTAGTCCTTTCCAAGTACCATTGAGCTTCAAGCATGACAACTAA 507 0.4892 MMMAVLAVSSQMSYAQNSPQDYLDAHNRARSQVGVGPIRWDATVAAYAQNYINTLRGSCKLVHSKGPYGENLAWSSGDLTGTAAVNMWVAEKPNYNYNSNSCVGGECRHYTQVVWRNSVRLGCAKVRCSNGRSTIISCNYDPPGNFIDERPYDISSPFQVPLSFKHDN. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05040 168 FunFam Putative pathogenesis-related protein 1 16 152 - -
Seca6g05040 168 ProSitePatterns CRISP family signature 1. 108 118 IPR018244 GO:0005576
Seca6g05040 168 Pfam Cysteine-rich secretory protein family 23 140 IPR014044 -
Seca6g05040 168 Gene3D CAP 12 157 IPR035940 -
Seca6g05040 168 SUPERFAMILY PR-1-like 12 156 IPR035940 -
Seca6g05040 168 ProSitePatterns CRISP family signature 2. 135 146 IPR018244 GO:0005576
Seca6g05040 168 PRINTS Allergen V5/Tpx-1 family signature 38 56 IPR001283 -
Seca6g05040 168 PRINTS Allergen V5/Tpx-1 family signature 84 97 IPR001283 -
Seca6g05040 168 PRINTS Allergen V5/Tpx-1 family signature 135 148 IPR001283 -
Seca6g05040 168 PRINTS Allergen V5/Tpx-1 family signature 107 123 IPR001283 -
Seca6g05040 168 SMART SCP_3 17 148 IPR014044 -
Seca6g05040 168 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 20 152 IPR001283 -
Seca6g05040 168 CDD CAP_PR-1 19 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05040 Seca-Chr6 117635306 117639409 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05040 K13449 - cave:132178713 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05040 6 117635306 117639409 Seca6g05040 6 117635306 117639409 ECH