Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04909 ATGGAGTGGAAGCTCCTTCGCGCGATTGGGAGCAGCAAGAGATTATACTATACGAGCAGGACGAAGAAACCGAGCCTTTACTCGAAAATCAGCCCACTTGGAAATCCCAGCACAAGCGTCGCTACCGAGCTCGATGATTGGGTCTACAAGGGGAACAAGGTCCGTGTCGGAGAGCTTCAGCGTATCGTTCGTGATCTTCGCAAGCGCAGTAGGTTCACCCAAGCCCTTCAGGTTGTATCTGAGTGGATGAATAAAAATGGTGTGTGCATATTTTCTCCAACTGAACATGCGGTGCATTTGGATCTGATTGGCAAGGTTCATGGATATCTTTCTGCAGAAAGCTATTTTAATAGCTTGAAGGATCAAGATAAAACTGAGAAGACATACGGTGCTCTCTTGAATTGCTATGTTCGACAGCGCCAAATTGATAAGTCCCTCTCTCATTTGCAGAAAATGAAGGAGTTGGGGTTTGCTTCCTCACCTCTTACATACAATGACATGATGTGTCTATACACAAATATTGGACAGCATGAGAAGGTTCCTGATGTGCTGACTGAGATGAAAGAAAACAAAGTTTTGCCGGACAACTTCAGCTACAGAATCTGTATAAATTCCTATGGTGCGAGGTCTGATATTGATGGAATGGAAAGAATATTGAAAGAGATGGAGAGTCAACCACACATTGTGATGGACTGGAATACTTATTCTGTGGTGGCTAATTTCTATATAAAGGCAGGGCTTACGAGTGATGCAGTTGATGCTCTAAAGAAATCTGAGGAGAGGCTAGATAACAAAGATGGAGAGGGTTACAATCACCTTATCTCTCTTTATGCCCGTCTTGGACAAAAGAATGAGGTCCTAAGACTATGGGATCTGGAGAAACATGCTTGCAAGAGGTGCATAAACCGGGATTTTGTGACCATGTTAGAATCTCTGGTTAAGCTTGCTGAGTTCGAAGAAGCTGAGAAAATACTAAGGGAATGGGAATCCTCTGACAATAGTTATGATTTTAGTGTTCCAAATATCTTAATCATTGGATACTCAGGAAAAGGTTTTCCTGAGAAAGCAGAAGCCATGCTTGAAGATTTACAGAAGAAAGGAAAAGCCACCACCCCAAATTGTTGGACTGTGGTGGCAGGTGGATACCTGCATAAGGATGAGGTGGAGAAAGCATTAGGGTGCTTAAAAACAGCCATCTCTTTGTATGTGGAAAATAAAGGATGGAAGCCTAACCCCAAGGTGATTGCTGGCCTATTGAATTGGATTGGTGATAAGGGCAGCGTTGAAGATGCAGAAAGTTTGGTGACCTTATTGAGAAATGTTGTTCCGGTAAATAGACTAATGTATAATGCCCTAATCAAGACTTACATACGAGACGGTAAAGAAGTGGATGAGCTTTTGGACCGCATGAAAAAAGATAACATAACTGAAAACAGAAACTAA 1443 0.4241 MEWKLLRAIGSSKRLYYTSRTKKPSLYSKISPLGNPSTSVATELDDWVYKGNKVRVGELQRIVRDLRKRSRFTQALQVVSEWMNKNGVCIFSPTEHAVHLDLIGKVHGYLSAESYFNSLKDQDKTEKTYGALLNCYVRQRQIDKSLSHLQKMKELGFASSPLTYNDMMCLYTNIGQHEKVPDVLTEMKENKVLPDNFSYRICINSYGARSDIDGMERILKEMESQPHIVMDWNTYSVVANFYIKAGLTSDAVDALKKSEERLDNKDGEGYNHLISLYARLGQKNEVLRLWDLEKHACKRCINRDFVTMLESLVKLAEFEEAEKILREWESSDNSYDFSVPNILIIGYSGKGFPEKAEAMLEDLQKKGKATTPNCWTVVAGGYLHKDEVEKALGCLKTAISLYVENKGWKPNPKVIAGLLNWIGDKGSVEDAESLVTLLRNVVPVNRLMYNALIKTYIRDGKEVDELLDRMKKDNITENRN. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04909 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Seca6g04909 480 SUPERFAMILY TPR-like 233 408 IPR011990 GO:0005515
Seca6g04909 480 NCBIfam pentatricopeptide repeat 128 157 IPR002885 -
Seca6g04909 480 NCBIfam pentatricopeptide repeat 163 195 IPR002885 -
Seca6g04909 480 NCBIfam pentatricopeptide repeat 197 231 IPR002885 -
Seca6g04909 480 PANTHER OS12G0527900 PROTEIN 19 476 - -
Seca6g04909 480 FunFam Pentatricopeptide repeat-containing protein mitochondrial 56 268 - -
Seca6g04909 480 Pfam PPR repeat 270 291 IPR002885 -
Seca6g04909 480 Pfam PPR repeat 341 367 IPR002885 -
Seca6g04909 480 Pfam PPR repeat 128 157 IPR002885 -
Seca6g04909 480 Pfam PPR repeat family 163 206 IPR002885 -
Seca6g04909 480 Gene3D Tetratricopeptide repeat domain 208 295 IPR011990 GO:0005515
Seca6g04909 480 Gene3D Tetratricopeptide repeat domain 296 399 IPR011990 GO:0005515
Seca6g04909 480 Gene3D Tetratricopeptide repeat domain 400 479 IPR011990 GO:0005515
Seca6g04909 480 Gene3D Tetratricopeptide repeat domain 44 207 IPR011990 GO:0005515
Seca6g04909 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04909 Seca-Chr6 116485923 116488389 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04909 25 473 EF-hand Containing Proteins AT1G02150 33.843 1.51e-83 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04909 - - lja:Lj6g3v2043070.1 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04909 6 116485923 116488389 Seca6g04909 6 116485923 116488389 ECH