Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04898 ATGGATGCTCACATTGCTGATTCAGACTGGGAGACTTCCAGTGAGAGCAGCAGCAGTGAGGATCAAGAGGATATTGATTTTCTATATGATGGGCAAGCTCGGAGCATATTATCAAGTTTAGAGGAAAGCATTGGGAGGATTGATGATTTTCTCTCATTTGAGAGATCATTTGTTCATGGGGATGTGGTTTGCTCCTTATCAGACCCATCTGGACAGATGGGGAGGGTCGTAAGTGTCAATATGTTAGTGGATTTGGAAAGTGTTCATGGAAACATATTAAAAAATGTTGACTCCAAGAAACTATTGAAGATTCGTTCCATTTCTGAAGGTGATTATGTAATTAAGGGGCCATGGCTTGGTCAGGTTCAAAGGGTGGTGGACAGAGTGACTGTATTGTTTGATGATGGAACTAAATGTGAGGTCATTACCTTGGAAAAAGATAAGCTTTTACCACTGACTCATAATTTTCTCGAAGATTCACAGTATCCATATTATCCAGGGCAGAGAGTAAAGGTTAAGTCCTCCACTGCTTCTAAATCAGCTAGATGGCTATGTGGCACATGGAAAGACAATCATGATGGAGGAACAGTTTGTGCGGTGGAAGCAGGTTTTGTGTATGTCAATTGGCTTGCCTCTGTTCTTTTTGGTTCCAATTTGAATGTGGACGCTCCTCCACGCTGGCAAGATTCCAAAAACTTGACATTGTTGTCATGTTTTTCACATGCAAACTGGCAACTTGGTGACTGGTGCATGCTCCCAGTTGCAGACCAAAAGGAGCAGATGATTCAAGATGCATCTACTAGCAATCTTCCTAATGAGCTTAGTATGGCTAGAGGATATAAGAGAAGAAACCTTAACTCTAACATGGGGGAATTATTTATAATTGGGAAGATAAAGACCAAAGTTGATATTGTTTGGCAAAATGGTGAACATACTTTGGGGTTAGATCCACATAACTTAATCCCAGTGAGTGTCATAAACACTCATGAATTTTGGCCTCAGCAGTTTGTGCTGGAAAAAGGTACTTCTGATGATCTTCTTAAGCCTAGCAATCAAAGATGGGGTGTTGTTCTATCTGTGGATGCAAAAGAGCATACTGTAAGTGTACAATGGCGAACTTTGCCCATATCTGAGCCAGATAATTTGGCTGGAGAAACAATGGTGGAAACCGTGAGTGCCTATGAACTTGTTGAGCACCCAGATTATTCCTGTTGTTTTGGTGATATTGTGTTCAAGGCAGCTCAAAAACATCTTGGTTACCAAGCTGACAATGATAATGCAAGTTCAGTGACTGACTTGAATGTGGAAGCTCCTCTGAGAAACCAGGACCAAATCAGTTATCAGAATAAGTCCCATGATAGTTGTTACCTGTCCTGTATTGGCAATGTTACTGGTTTCAGAGATGGGGATGTGGAGGTGAAATGGGCTACCGGATTAATAACCAAGGAAGTCATTATAAATTTATTTGTGCTCCAACAGGTGGCACCTTATGAAATATTTCGGATTGATAAACATGAAGATTCAACTGCAACCCCCGTTTCTTATGAAGAAAATGATGAGGAGTTGGCTGAAGAGATGATTGAACATGGAAGTCTGCCATCTGACAAGAACGGAAAGGACTTGTTAGATTGTAATGGTGATGGAGATAATTGTAAAAGGCATACAGGAGAGAGTAGTTCATTTTCCCTTCCTCAAGCTGCCTTTGAACTGTTCTCAAGTATTAAAGCCAGCGTATTCCAAAAACTTGGTGTAACATCACAATATGGAGCAGTTTCTACAGTCCCTACATTTGTAGAGGGAAATTTAGAAACTTGTGACCCCAAAACTGAATCACATCCGGTGAGCAAGTTGCAGTCTACTGAAGAGACAACTCCATATTGTGAAGTTATTAGGAGTCATGAGAGGAATGATTTTCCCGTTTCTGTAGACAGCAACAATTCAGATCAGTTGAAGAAGTTTGATGTAATTGATAATTGCTCAGACCACCACTTTTTTAATGAGGGAAAAGGATTGTCATTATCTCAGGTTAAAAAAAATTGGGTGAAAAAGGTACAGCAAGAATGGAGCATCCTGGAGCAAAATCTTCCTGAAACTATTTATGTCCGTGTTTTTGAAGAAAGAATGGATCTAATGCGAGCAGCCATTGTTGGTGCGTCTGGGACACCTTATCATGATGGGCTGTTTTTCTTCGATATACGTTTCCCTCCAGAGTATCCCAGTGAACCACCTATGGTGCACTATAATTCTGGTGGGCTACGATTGAATCCTAATTTGTATGAGTCAGGGAAAGTCTGTCTCAGTCTCCTAAATACATGGACTGGCACAGCCACTGAAGTGTGGAACCCTGGAGCTTCCACAATTCTTCAAGTCCTTCTCTCTCTGCAGGCCCTTGTCCTTAATGAGAAGCCTTATTTCAATGAGGCTGGGTATGATCAACAAATTGGCAGAGCTGAAGGAGAGAGAAACTCAGTGAGTTACAATGAGAATGCTTTCCTTGTCACCTGCAAATCCATGATGTATCTATTAAGAAAGCCGCCCAAGCATTTTGAGGCATTGGTGGAAGAGCATTTTAGGCAGCGCTCCAAACATATGCTTCTTGCTTGTAAGGCATATCTTGAAGGAGCTCCCATTGGATGTGCTTTTGGTGATGGAAAACCTGAGCCTGAAAACAGGAAGGGAACTTCTACTGGATTTAAAATTATGCTTGCTAAGCTCTTCCCCAAGCTTGTAGAGGCATTTTCTGATAAGGGAATTGATTGCTGCCAGTTTGTTGAGATGCAAAAGTAA 2787 0.4126 MDAHIADSDWETSSESSSSEDQEDIDFLYDGQARSILSSLEESIGRIDDFLSFERSFVHGDVVCSLSDPSGQMGRVVSVNMLVDLESVHGNILKNVDSKKLLKIRSISEGDYVIKGPWLGQVQRVVDRVTVLFDDGTKCEVITLEKDKLLPLTHNFLEDSQYPYYPGQRVKVKSSTASKSARWLCGTWKDNHDGGTVCAVEAGFVYVNWLASVLFGSNLNVDAPPRWQDSKNLTLLSCFSHANWQLGDWCMLPVADQKEQMIQDASTSNLPNELSMARGYKRRNLNSNMGELFIIGKIKTKVDIVWQNGEHTLGLDPHNLIPVSVINTHEFWPQQFVLEKGTSDDLLKPSNQRWGVVLSVDAKEHTVSVQWRTLPISEPDNLAGETMVETVSAYELVEHPDYSCCFGDIVFKAAQKHLGYQADNDNASSVTDLNVEAPLRNQDQISYQNKSHDSCYLSCIGNVTGFRDGDVEVKWATGLITKEVIINLFVLQQVAPYEIFRIDKHEDSTATPVSYEENDEELAEEMIEHGSLPSDKNGKDLLDCNGDGDNCKRHTGESSSFSLPQAAFELFSSIKASVFQKLGVTSQYGAVSTVPTFVEGNLETCDPKTESHPVSKLQSTEETTPYCEVIRSHERNDFPVSVDSNNSDQLKKFDVIDNCSDHHFFNEGKGLSLSQVKKNWVKKVQQEWSILEQNLPETIYVRVFEERMDLMRAAIVGASGTPYHDGLFFFDIRFPPEYPSEPPMVHYNSGGLRLNPNLYESGKVCLSLLNTWTGTATEVWNPGASTILQVLLSLQALVLNEKPYFNEAGYDQQIGRAEGERNSVSYNENAFLVTCKSMMYLLRKPPKHFEALVEEHFRQRSKHMLLACKAYLEGAPIGCAFGDGKPEPENRKGTSTGFKIMLAKLFPKLVEAFSDKGIDCCQFVEMQK. 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04898 928 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 679 839 IPR000608 -
Seca6g04898 928 SMART ubc_7 682 839 - -
Seca6g04898 928 CDD UBCc 681 834 IPR000608 -
Seca6g04898 928 Gene3D Ubiquitin Conjugating Enzyme 639 920 IPR016135 -
Seca6g04898 928 FunFam Probable ubiquitin-conjugating enzyme E2 23 641 917 - -
Seca6g04898 928 SUPERFAMILY UBC-like 672 848 IPR016135 -
Seca6g04898 928 Pfam Ubiquitin-conjugating enzyme 684 830 IPR000608 -
Seca6g04898 928 MobiDBLite consensus disorder prediction 1 23 - -
Seca6g04898 928 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 3 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04898 Seca-Chr6 116416982 116424701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04898 21 922 Miscellaneous Gene Families AT2G33770 49.672 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04898 K10581 - gmx:100784814 1502.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04898 6 116416982 116424701 Seca6g04898 6 116416982 116424701 ECH