Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04715 ATGGAGGGCAAAAATTTGGATTCTAATAATCAGGTGAAGGTTATAGAAAACTTATCTACAAGGGTTTCTAGTATCTCCCTTGGCGACCAGACATCCAATTCCAATTCTCATCCGGATGATGAGGTGGGTAGTAGTAGGAAGAATCATCATGTTAATAAAGAGTATTGTGATTCTTTTTCCTATGCTAGCATTGAAGGGAATAGTATGAATTCATCCAAATCATATCCTGAATTACCTGAAAAACCATTGGAAAAGAATAAGGAGGACATGGAGTCTTCAGCTGATCTTCAGAAGCCGGGAAAATACTTTTATTATGATGCTCCACTGTATGAAGATACTGGAGTTTGGATACCAGTTTCAGTTCCACCTATGTTGGAAGATGATCACAAAGAGTGGGCCAAAGGTTTTCACTCGAATGGCGGCTATTTTCCTGATGATGACATGGGATGGAATCAATATGTTGGAGAAGAGAGGGAATTGACTATGTGGGACGTGCTAGCAGAAATGTTACTTGTAGCTAGGGGAAAAGTGACTTCTTTGGCATCAGGAGATATTCATACATGTACATTTTCATGGATTTCCAGCCATGTACTTGAACAAGCTTGGAGAGAGATGGCACAAACTCTTACAGAGGCCAACTTTGGTAATGTGAGGGAACTACTGGAAGCAGAGCCTCCAAAATGGTTGGCAGATAGTGCTGCTGCTTCTTGTATGCTTTGTGGTGTGAGGTTTCATCCCATCATGTGCTCTCGACATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAATGCTCCAAAGGACGGAGCTTGTTGCCGTTGAAGTTCCGCGTTTCTGACCCCCAAAGAGTCTGTGATGTTTGTTGTGTCCGACTTGAGTCTGTACAGCCTTATTTGATGGATCATGTAAGTAATGCTGCTCAATTGCCAACCCAAGACCTGACAGATCTCAGCACTTTAAGATCATGGGTTAATTTTCCATGGGGGCAGTCCATGGAGTATGAAATTTACAAGGCAACTAACACTATCAAGGCTTATAATAATAAGATAGGTTTTTTAAAGCCTGAGAAGTCAATTCCAGATGTCATTCTAAGGCAAGCAAAAGGCCTTGCAATTATCACTGTGGTCAAAGTAGGAGTGATGGTTACTTATAATATTGGAACAGGACTTGTGGTTGCACGTAGGGAAGATGGTTCATGGTCTCCCCCATCTGCCATTTCCACATTTGGTGTGGGGTGGGGTGCTCAGGTTGGAGGAGAGTTAACAGACTTCATTATTGTTCTGAGAACAAATGATGCTGTCAAGACATTTAGTGGTAATGTGCATCTTTCACTTGGAGCTGGTTTGAGTGCTGCAGTTGGCATAGTTGGAAGGGCAGTTGAAGCTGATATTCGAGCTGGTGATGGTGGCTATGCTGCTTGTTATACATACAGCTGCAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGGAGTATTGTCACCACTCGCACACAAGAAAATTGTCGTTTTTATGGCAGCCAGTCTATAACTGCAACAGATATACTTCTTGGCTCGCTGCCTAGGCCACCTGCTGCAGCCATTCTCTACCGCGCTCTTGCAGATTTGTATCTCAAGATTGATGGTTAA 1629 0.4279 MEGKNLDSNNQVKVIENLSTRVSSISLGDQTSNSNSHPDDEVGSSRKNHHVNKEYCDSFSYASIEGNSMNSSKSYPELPEKPLEKNKEDMESSADLQKPGKYFYYDAPLYEDTGVWIPVSVPPMLEDDHKEWAKGFHSNGGYFPDDDMGWNQYVGEERELTMWDVLAEMLLVARGKVTSLASGDIHTCTFSWISSHVLEQAWREMAQTLTEANFGNVRELLEAEPPKWLADSAAASCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPLKFRVSDPQRVCDVCCVRLESVQPYLMDHVSNAAQLPTQDLTDLSTLRSWVNFPWGQSMEYEIYKATNTIKAYNNKIGFLKPEKSIPDVILRQAKGLAIITVVKVGVMVTYNIGTGLVVARREDGSWSPPSAISTFGVGWGAQVGGELTDFIIVLRTNDAVKTFSGNVHLSLGAGLSAAVGIVGRAVEADIRAGDGGYAACYTYSCSKGAFVGCSLEGSIVTTRTQENCRFYGSQSITATDILLGSLPRPPAAAILYRALADLYLKIDG. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04715 542 PANTHER SH3YL1 PROTEIN 192 540 - -
Seca6g04715 542 SMART fyve_4 223 294 IPR000306 GO:0046872
Seca6g04715 542 MobiDBLite consensus disorder prediction 22 49 - -
Seca6g04715 542 MobiDBLite consensus disorder prediction 22 39 - -
Seca6g04715 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 303 IPR013083 -
Seca6g04715 542 MobiDBLite consensus disorder prediction 78 94 - -
Seca6g04715 542 Pfam Las17-binding protein actin regulator 410 534 IPR007461 -
Seca6g04715 542 FunFam Zinc finger family protein 217 299 - -
Seca6g04715 542 SUPERFAMILY FYVE/PHD zinc finger 226 305 IPR011011 -
Seca6g04715 542 CDD SYLF_FYVE 334 536 - -
Seca6g04715 542 MobiDBLite consensus disorder prediction 69 94 - -
Seca6g04715 542 Pfam FYVE zinc finger 227 292 IPR000306 GO:0046872
Seca6g04715 542 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 231 293 IPR017455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04715 Seca-Chr6 114736299 114739778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04715 228 311 EF-hand Containing Proteins AT3G14270 33.708 4.97e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04715 K20523 - gmx:100813648 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04715 6 114736299 114739778 Seca6g04715 6 114736299 114739778 ECH