Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04438 ATGAACAGAGTGAACATGGGAAACAAGATCAATGTGTTTGCGTTCTGTTTCTGTGTGTGGACCCTGTTGTTTTGTCTGGTCTCTTGTGCACATGATGATGGGTTGCGTAGGATTGGACTGAAAAAGGTCAAATTGGGCCCCAACGATCGGTTGGGGTTCAAGGATGCTGAGTCTCTGCGGTCTTCTATTAGGAAGTATCATTTCCAAAACATCCTTGGAGGTACTGAGGACACCGATGTTGTTGCACTGAAGAATTACTTGGATGCTCAGTACTACGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACTGGCAGCTCTAATACGTGGGTGCCATCATCTAGATGTTACTTTTCGCTTGCATGCCTCTTCCATGCCAAGTACAGGTCTAGCCTGTCAAGTACCTACAAGGAAAATGGTTTGTCTTCTTCTTGTCTTTTAAGGGTTTGCTTTCCTTTGATCAGTCTTTATGGAGGGACTTCTGCTGCAATTCAATATGGAACTGGAGCAATTTCTGGTTTCTTTAGCTATGACCATGTCACAGTTGGTGACATAGTTGTAAAAGACCATGAATTTATTGAAGCAACTAGTGAGCCTGGAGTTACATTTGTGATGGCTAAGTTTGATGGTTTGCTAGGACTTGGATTTCAAGAGATATCAGTTGGATATGCTGTTCCACTGTGGTACAATATGATTGAGCAAGGTCTTGTTAAGGATCCAGTATTTTCATTTTGGCTCAATCGTAAACCAGAAGAAGAGGAAGGAGGTGAGATTGTTTTTGGTGGTGTTGATCCTGCTCACTTTAAGGGCGAACATACTTATGTGCCTGTGACAAGAAAAGGATATTGGCAGTTTGACATGGGAGATGTACTTATTGGTGGTAAACCCACTGGATATTGTGCTCAAGGATGTTCAGCAATTGCGGACTCAGGGACGTCTTTGTTGGCAGGTCCTACGACTATAATTACTATGATAAATCAAGCAATTGGAGCATCTGGAGTTGTAAGCAAAGAATGCAAGTCCGTTGTTGAACAGTATGGACCAACAATCTTAGAATTGCTCTTGGCTGAAGCACAGCCAAAGAAGATCTGCTCCCAAGTTGGATTGTGCACCTTTGATGGGACTCGAGGTGTTAGTATGGGTATCGAGAGTGTGGTGGATAAGATTGAAAGAAAATCATCTGGTGCCTCTCGGGATGCTTCTTGTTCTGTATGCGAGATGGCTGTTTTTTGGATGCAGAACCAGCTGAGGCAGAACCAGACACAAGATCAGATAATAAACTATGTCAATGGGCTTTGTGATAAAATGCCTAACCCATTGGGACAATCATCTGTTGACTGTGAAAAGATCTCTTCAATGCCTACTGTTTCCTTCACAATTGGTGGAAAGATTTTTGACCTTGCCCCACAGGAGTACATACTGAAGGTGGGCGACGGATCTGGAGCCCAATGCATTAGTGGCTTTACTGCTTTGGATGTTCCACCTCCACGTGGCCCACTCTGGATCCTTGGAGATGTCTTCATGGGGCCCTATCACACAGTTTTTGATTATGGTAATCTGAGAGTGGGATTTGCCAAAGCAGCATAG 1605 0.4374 MNRVNMGNKINVFAFCFCVWTLLFCLVSCAHDDGLRRIGLKKVKLGPNDRLGFKDAESLRSSIRKYHFQNILGGTEDTDVVALKNYLDAQYYGEIAIGTPPQKFTVIFDTGSSNTWVPSSRCYFSLACLFHAKYRSSLSSTYKENGLSSSCLLRVCFPLISLYGGTSAAIQYGTGAISGFFSYDHVTVGDIVVKDHEFIEATSEPGVTFVMAKFDGLLGLGFQEISVGYAVPLWYNMIEQGLVKDPVFSFWLNRKPEEEEGGEIVFGGVDPAHFKGEHTYVPVTRKGYWQFDMGDVLIGGKPTGYCAQGCSAIADSGTSLLAGPTTIITMINQAIGASGVVSKECKSVVEQYGPTILELLLAEAQPKKICSQVGLCTFDGTRGVSMGIESVVDKIERKSSGASRDASCSVCEMAVFWMQNQLRQNQTQDQIINYVNGLCDKMPNPLGQSSVDCEKISSMPTVSFTIGGKIFDLAPQEYILKVGDGSGAQCISGFTALDVPPPRGPLWILGDVFMGPYHTVFDYGNLRVGFAKAA. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04438 534 PRINTS Pepsin (A1) aspartic protease family signature 262 275 IPR001461 GO:0004190|GO:0006508
Seca6g04438 534 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Seca6g04438 534 PRINTS Pepsin (A1) aspartic protease family signature 507 522 IPR001461 GO:0004190|GO:0006508
Seca6g04438 534 PRINTS Pepsin (A1) aspartic protease family signature 97 117 IPR001461 GO:0004190|GO:0006508
Seca6g04438 534 ProSiteProfiles Saposin B type domain profile. 340 380 IPR008139 -
Seca6g04438 534 Pfam Eukaryotic aspartyl protease 165 533 IPR033121 -
Seca6g04438 534 SMART sapb_4 406 490 IPR008139 -
Seca6g04438 534 SMART sapb_4 304 376 IPR008139 -
Seca6g04438 534 Pfam Eukaryotic aspartyl protease 90 148 IPR033121 -
Seca6g04438 534 FunFam Vacuolar aspartic proteinase 416 533 - -
Seca6g04438 534 FunFam Lysosomal aspartic protease 160 338 - -
Seca6g04438 534 FunFam Aspartic proteinase A1 340 443 - -
Seca6g04438 534 Pfam Saposin-like type B, region 2 343 376 IPR008138 -
Seca6g04438 534 SUPERFAMILY Acid proteases 20 533 IPR021109 -
Seca6g04438 534 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 312 323 IPR001969 GO:0004190|GO:0006508
Seca6g04438 534 SUPERFAMILY Saposin 341 443 IPR011001 -
Seca6g04438 534 Gene3D Acid Proteases 269 534 IPR021109 -
Seca6g04438 534 Pfam Saposin-like type B, region 1 408 443 IPR007856 GO:0006629
Seca6g04438 534 CDD phytepsin 81 532 IPR033869 GO:0004190
Seca6g04438 534 ProSiteProfiles Saposin B type domain profile. 404 445 IPR008139 -
Seca6g04438 534 Gene3D Acid Proteases 36 268 IPR021109 -
Seca6g04438 534 Gene3D - 340 443 - -
Seca6g04438 534 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 23 532 IPR001461 GO:0004190|GO:0006508
Seca6g04438 534 ProSiteProfiles Peptidase family A1 domain profile. 91 531 IPR033121 -
Seca6g04438 534 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 106 117 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04438 Seca-Chr6 111950216 111954853 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04438 K08245 - gmx:547943 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04438 6 111950216 111954853 Seca6g04438 6 111950216 111954853 ECH