Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g04328 | ATGGATAACTCTCACACCCGTCGTGGTCAGCCATGCTGGTTTAGAGTACCCAAGGTTGGACTGATTGCAGCAAATGATGGAGTTCTACTTCGAAACCATATTCCGCGCATACTTAAGAAACACTTCAGGGGAAAACCATATTATGTTGATCTTCTTGATTTGTTCAATGAGGTTGAGTTCCAAACTGCTTCAGGACAGATGATTGATCTGATCACAACGCTGGAAGGAGAAAAAGACCTGTCCAAATACACTTTATCACTGCACCGGCGTATTGTTCAGTACAAGACTGCCTATTATTCATTTTACCTTCCAGTTGCATGTGCATTGCTAATGGCGGGTGAGAATTTGGATAACCATATTGATGTGAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGGATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATAGGAAAGATAGGTACAGATATTGAAGATTTTAAGTGCTCTTGGTTAGTTGTGAAAGCATTGGAACTTAGCAATGAAGAACAAAAGAAAGTTTTACATGAGAACTATGGAAATCCAGATCCAGCTAATGTTGCTAAAGTGAAGGCTCTGTACAACGAGCTTAACCTTCAGGGTGTATTTGCGGAGTATGAGAGTGCGAGCTATGAGAAGCTTGTAACCTCTATTGAAGCTCATCCTAGCAAAGCAGTTCAAGCTGTATTGAAGTCCTTTTTGGCCAAGATTTACAAGAGGCAGAAGTAG | 744 | 0.4046 | MDNSHTRRGQPCWFRVPKVGLIAANDGVLLRNHIPRILKKHFRGKPYYVDLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMAGENLDNHIDVKNILVEMGTYFQVQDDYLDCFGDPQTIGKIGTDIEDFKCSWLVVKALELSNEEQKKVLHENYGNPDPANVAKVKALYNELNLQGVFAEYESASYEKLVTSIEAHPSKAVQAVLKSFLAKIYKRQK. | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g04328 | 247 | Gene3D | Farnesyl Diphosphate Synthase | 1 | 246 | IPR008949 | - | |
| Seca6g04328 | 247 | Pfam | Polyprenyl synthetase | 1 | 201 | IPR000092 | GO:0008299 | |
| Seca6g04328 | 247 | SUPERFAMILY | Terpenoid synthases | 1 | 246 | IPR008949 | - | |
| Seca6g04328 | 247 | FunFam | Farnesyl pyrophosphate synthase | 1 | 246 | - | - | |
| Seca6g04328 | 247 | PANTHER | FARNESYL-PYROPHOSPHATE SYNTHETASE | 1 | 247 | IPR039702 | GO:0008299|GO:0016765 | |
| Seca6g04328 | 247 | CDD | Trans_IPPS_HT | 1 | 245 | IPR000092 | GO:0008299 | |
| Seca6g04328 | 247 | ProSitePatterns | Polyprenyl synthases signature 2. | 129 | 141 | IPR033749 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g04328 | Seca-Chr6 | 110995391 | 110997790 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g04328 | K00787 | - | gmx:100782137 | 474.167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca6g04328 | 6 | 110995391 | 110997790 | Seca6g04328 | 6 | 110995391 | 110997790 | ECH |